Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value SEQ14679 122 7e-23 SEQ11513 122 7e-23 SEQ10795 122 7e-23 SEQ10794 122 7e-23 SEQ12144 109 4e-19 SEQ10630 109 4e-19 SEQ10629 109 4e-19 >SEQ14679 Length=18604 Score = 122 bits (134), Expect = 7e-23 Identities = 182/256 (71%), Gaps = 12/256 (5%) Strand=Plus/Minus Query 29628 CCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCA 29687 ||| ||| ||||| | |||||| |||||||||| |||||||||| || || || | Sbjct 16108 CCCGCTCCAGCTGCTGCTTCAGCGCATCCACGTGGTTGCGGTAGACGTGCGCGTCACCGA 16049 Query 29688 GGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGA 29747 ||||||| || | ||| ||||| |||||||| | | || |||| | ||| || | Sbjct 16048 GGGTGTGCACCAGCTCCCCCGGACGCAGCCCGGTCGCCTTTGCGATCAAGATCGTCAGCA 15989 Query 29748 GAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGA 29807 | ||||| || ||||| || ||||||||||| |||||||| | || | |||||| | Sbjct 15988 GCGAGTACGACGCAATGTTGAACGGCACCCCGAGACCCATGTCACACGAGCGCTGGTACA 15929 Query 29808 GCTGGCACGAGAGCTC-------TCCGTCGCTCACGTAAAACTGACACATGGCA--TGGC 29858 || ||| || | ||| ||||| | | ||||| ||||| | | ||| |||| Sbjct 15928 GCATGCAGGACAACTCCTTCGTGTCCGT-GTTGACGTAGAACTGGCCGA--GCAGGTGGC 15872 Query 29859 ACGGAGGAAGGGCCAT 29874 | ||||| |||||||| Sbjct 15871 AAGGAGGGAGGGCCAT 15856 >SEQ11513 Length=10065 Score = 122 bits (134), Expect = 7e-23 Identities = 182/256 (71%), Gaps = 12/256 (5%) Strand=Plus/Plus Query 29628 CCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCA 29687 ||| ||| ||||| | |||||| |||||||||| |||||||||| || || || | Sbjct 8443 CCCGCTCCAGCTGCTGCTTCAGCGCATCCACGTGGTTGCGGTAGACGTGCGCGTCACCGA 8502 Query 29688 GGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGA 29747 ||||||| || | ||| ||||| |||||||| | | || |||| | ||| || | Sbjct 8503 GGGTGTGCACCAGCTCCCCCGGACGCAGCCCGGTCGCCTTTGCGATCAAGATCGTCAGCA 8562 Query 29748 GAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGA 29807 | ||||| || ||||| || ||||||||||| |||||||| | || | |||||| | Sbjct 8563 GCGAGTACGACGCAATGTTGAACGGCACCCCGAGACCCATGTCACACGAGCGCTGGTACA 8622 Query 29808 GCTGGCACGAGAGCTC-------TCCGTCGCTCACGTAAAACTGACACATGGCA--TGGC 29858 || ||| || | ||| ||||| | | ||||| ||||| | | ||| |||| Sbjct 8623 GCATGCAGGACAACTCCTTCGTGTCCGT-GTTGACGTAGAACTGGCCGA--GCAGGTGGC 8679 Query 29859 ACGGAGGAAGGGCCAT 29874 | ||||| |||||||| Sbjct 8680 AAGGAGGGAGGGCCAT 8695 >SEQ10795 Length=18609 Score = 122 bits (134), Expect = 7e-23 Identities = 182/256 (71%), Gaps = 12/256 (5%) Strand=Plus/Plus Query 29628 CCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCA 29687 ||| ||| ||||| | |||||| |||||||||| |||||||||| || || || | Sbjct 2497 CCCGCTCCAGCTGCTGCTTCAGCGCATCCACGTGGTTGCGGTAGACGTGCGCGTCACCGA 2556 Query 29688 GGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGA 29747 ||||||| || | ||| ||||| |||||||| | | || |||| | ||| || | Sbjct 2557 GGGTGTGCACCAGCTCCCCCGGACGCAGCCCGGTCGCCTTTGCGATCAAGATCGTCAGCA 2616 Query 29748 GAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGA 29807 | ||||| || ||||| || ||||||||||| |||||||| | || | |||||| | Sbjct 2617 GCGAGTACGACGCAATGTTGAACGGCACCCCGAGACCCATGTCACACGAGCGCTGGTACA 2676 Query 29808 GCTGGCACGAGAGCTC-------TCCGTCGCTCACGTAAAACTGACACATGGCA--TGGC 29858 || ||| || | ||| ||||| | | ||||| ||||| | | ||| |||| Sbjct 2677 GCATGCAGGACAACTCCTTCGTGTCCGT-GTTGACGTAGAACTGGCCGA--GCAGGTGGC 2733 Query 29859 ACGGAGGAAGGGCCAT 29874 | ||||| |||||||| Sbjct 2734 AAGGAGGGAGGGCCAT 2749 >SEQ10794 Length=10062 Score = 122 bits (134), Expect = 7e-23 Identities = 182/256 (71%), Gaps = 12/256 (5%) Strand=Plus/Minus Query 29628 CCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCA 29687 ||| ||| ||||| | |||||| |||||||||| |||||||||| || || || | Sbjct 1623 CCCGCTCCAGCTGCTGCTTCAGCGCATCCACGTGGTTGCGGTAGACGTGCGCGTCACCGA 1564 Query 29688 GGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGA 29747 ||||||| || | ||| ||||| |||||||| | | || |||| | ||| || | Sbjct 1563 GGGTGTGCACCAGCTCCCCCGGACGCAGCCCGGTCGCCTTTGCGATCAAGATCGTCAGCA 1504 Query 29748 GAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGA 29807 | ||||| || ||||| || ||||||||||| |||||||| | || | |||||| | Sbjct 1503 GCGAGTACGACGCAATGTTGAACGGCACCCCGAGACCCATGTCACACGAGCGCTGGTACA 1444 Query 29808 GCTGGCACGAGAGCTC-------TCCGTCGCTCACGTAAAACTGACACATGGCA--TGGC 29858 || ||| || | ||| ||||| | | ||||| ||||| | | ||| |||| Sbjct 1443 GCATGCAGGACAACTCCTTCGTGTCCGT-GTTGACGTAGAACTGGCCGA--GCAGGTGGC 1387 Query 29859 ACGGAGGAAGGGCCAT 29874 | ||||| |||||||| Sbjct 1386 AAGGAGGGAGGGCCAT 1371 >SEQ12144 Length=2121 Score = 109 bits (120), Expect = 4e-19 Identities = 135/180 (75%), Gaps = 6/180 (3%) Strand=Plus/Minus Query 53497 CAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTT-TGCATCCTTCA 53555 |||||||| | | | ||| || | ||| | || || |||||||| |||| || || Sbjct 1372 CAAGGTGAAGATCCGCACCATCAAGATCCCGAACATCGGTGACAAGTTCTGCAGCCGGCA 1313 Query 53556 CGGCGCAAAAGGGGACATGCGGAG--CGGTCCTGACTCAGGAGGACATGCCCTTCGACAA 53613 ||| ||| ||||| || ||| | || | | ||||||||||||||| ||| || Sbjct 1312 CGG-GCAGAAGGGCACCAACGGTATTCAGTTCCG--TCAGGAGGACATGCCTTTCAACCG 1256 Query 53614 GGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGACGGT 53673 ||||| |||||||||||||||||||||||||| |||||| |||| ||| | |||||||| Sbjct 1255 CGACGGCGTGGTGCCCGACCTCATCATCAACCCGCACGCCATTCCTTCCCGTATGACGGT 1196 >SEQ10630 Length=2617 Score = 109 bits (120), Expect = 4e-19 Identities = 135/180 (75%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 53497 CAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTT-TGCATCCTTCA 53555 |||||||| | | | ||| || | ||| | || || |||||||| |||| || || Sbjct 750 CAAGGTGAAGATCCGCACCATCAAGATCCCGAACATCGGTGACAAGTTCTGCAGCCGGCA 809 Query 53556 CGGCGCAAAAGGGGACATGCGGAG--CGGTCCTGACTCAGGAGGACATGCCCTTCGACAA 53613 ||| ||| ||||| || ||| | || | | ||||||||||||||| ||| || Sbjct 810 CGG-GCAGAAGGGCACCAACGGTATTCAGTTCCG--TCAGGAGGACATGCCTTTCAACCG 866 Query 53614 GGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGACGGT 53673 ||||| |||||||||||||||||||||||||| |||||| |||| ||| | |||||||| Sbjct 867 CGACGGCGTGGTGCCCGACCTCATCATCAACCCGCACGCCATTCCTTCCCGTATGACGGT 926 >SEQ10629 Length=1811 Score = 109 bits (120), Expect = 4e-19 Identities = 135/180 (75%), Gaps = 6/180 (3%) Strand=Plus/Minus Query 53497 CAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTT-TGCATCCTTCA 53555 |||||||| | | | ||| || | ||| | || || |||||||| |||| || || Sbjct 741 CAAGGTGAAGATCCGCACCATCAAGATCCCGAACATCGGTGACAAGTTCTGCAGCCGGCA 682 Query 53556 CGGCGCAAAAGGGGACATGCGGAG--CGGTCCTGACTCAGGAGGACATGCCCTTCGACAA 53613 ||| ||| ||||| || ||| | || | | ||||||||||||||| ||| || Sbjct 681 CGG-GCAGAAGGGCACCAACGGTATTCAGTTCCG--TCAGGAGGACATGCCTTTCAACCG 625 Query 53614 GGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGACGGT 53673 ||||| |||||||||||||||||||||||||| |||||| |||| ||| | |||||||| Sbjct 624 CGACGGCGTGGTGCCCGACCTCATCATCAACCCGCACGCCATTCCTTCCCGTATGACGGT 565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406088784936238