Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3668 179 8e-40 seq6451 161 2e-34 SEQ14990 158 3e-33 seq5330 118 2e-21 SEQ11735 102 2e-16 SEQ11734 102 2e-16 SEQ11243 98.7 2e-15 SEQ11242 98.7 2e-15 SEQ11241 98.7 2e-15 seq1102 98.7 2e-15 seq8796 95.1 3e-14 seq6209 95.1 3e-14 >seq3668 Length=3103 Score = 179 bits (198), Expect = 8e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || || || || | ||| || || |||||||||||||| || Sbjct 161 CCACCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 220 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||||| || || ||||| ||| Sbjct 221 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 280 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || ||||| || || ||| | ||||| ||||| || ||||| Sbjct 281 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACC 340 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| | |||||||||||| |||| ||||| ||||| |||||||| Sbjct 341 TCGAGGGCGATCGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 387 >seq6451 Length=1481 Score = 161 bits (178), Expect = 2e-34 Identities = 166/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 282883 GGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGC 282942 |||| || || || || | ||| || || |||||||||||||| || |||||||||| Sbjct 1 GGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGC 60 Query 282943 CATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCT 283002 | || || || || || ||||||||||||| || || ||||| ||| || ||||||| Sbjct 61 CCTCTTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCT 120 Query 283003 TGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGA 283062 |||| || ||||| || || ||| | ||||| ||||| || ||||| ||||| | || Sbjct 121 TGTCCTGAATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGA 180 Query 283063 TCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||||| |||| ||||| || || |||||||| Sbjct 181 TCGTCTTACCGGTCAGGGTCTTCACAAAGATCTGCAT 217 >SEQ14990 Length=15354 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || || || || | ||| || || |||||||||||||| || Sbjct 9180 CCACCGCGCAGGCGCAGCACNAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 9121 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || || || ||||||| || || ||||| ||| Sbjct 9120 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 9061 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || ||||| || || ||| | ||||| ||||| || ||||| Sbjct 9060 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCGACC 9001 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || | || ||||| || |||| ||||| ||||| |||||||| Sbjct 9000 TCCAGCGCAATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 8954 >seq5330 Length=12009 Score = 118 bits (130), Expect = 2e-21 Identities = 118/153 (77%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || || || || | ||| || || |||||||||||||| || Sbjct 154 CCACCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 95 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||||| || || ||||| ||| Sbjct 94 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 35 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACG 283025 || ||||||||||| || ||||| || || ||| Sbjct 34 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACG 2 >SEQ11735 Length=18701 Score = 102 bits (112), Expect = 2e-16 Identities = 238/346 (69%), Gaps = 20/346 (6%) Strand=Plus/Plus Query 273779 CGTGAAAATGTACCTGGCACTCG-CATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACT 273837 |||||| ||||| | | | | || | |||||||| || || ||||||| || |||||||| Sbjct 15945 CGTGAAGATGTAAC-GACCCGCGGCGTGGTCCTTTCCGCCCTGCAGCCGCGTACCAAACT 16003 Query 273838 GACCCTC---GGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATAT 273894 |||| || | |||| || | ||||||||||| ||||| | || || ||||| Sbjct 16004 GACCGTCCTTGCGCAGGAGAGGG---ATGTTGTTGCTGCCGACAAAGTCTTGTGCCATGC 16060 Query 273895 TCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATAT 273954 ||| || ||| | || || |||||||||||| |||||| ||| || | || | Sbjct 16061 CCACAATCGTCTGCACCAGCGACTGCTCGCCGTGGTGGTAGGCGGAGTGCTCCGAGACGT 16120 Query 273955 AACCACTGAACTGAGCAACCTTCACATCGC-TCGTC-AAGTTTCGCTTGAATGCGGAATA 274012 |||| | ||| | ||||| ||||| | | | | ||| |||||||| |||| | Sbjct 16121 AACCGGACAGCTGGACCACCTT--GATCGCGTTGACGAGGTTGCGCTTGAAGCAGGAAAA 16178 Query 274013 CAACACCTTCCGCTGCGAGGGCTTGAACCCATCAA-CGACCGAT-GGAATACTGCGTTCC 274070 | | ||| |||||| |||||||| || |||| || || | || || ||||| || Sbjct 16179 GAGAATCTTGCGCTGCCCAGGCTTGAAGCCGTCAATCG--CGCTCGGGATGCTGCGCTCG 16236 Query 274071 AAATCATACCGA--GAGAACAAAATCAGTTCCTTGTCAATGAAGTC 274114 | || ||| ||||| | |||||| ||||| || | ||||| Sbjct 16237 CAGTC--TGCGATGGAGAAGAGAATCAGCTCCTTATCCACAAAGTC 16280 >SEQ11734 Length=18705 Score = 102 bits (112), Expect = 2e-16 Identities = 238/346 (69%), Gaps = 20/346 (6%) Strand=Plus/Plus Query 273779 CGTGAAAATGTACCTGGCACTCG-CATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACT 273837 |||||| ||||| | | | | || | |||||||| || || ||||||| || |||||||| Sbjct 15945 CGTGAAGATGTAAC-GACCCGCGGCGTGGTCCTTTCCGCCCTGCAGCCGCGTACCAAACT 16003 Query 273838 GACCCTC---GGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATAT 273894 |||| || | |||| || | ||||||||||| ||||| | || || ||||| Sbjct 16004 GACCGTCCTTGCGCAGGAGAGGG---ATGTTGTTGCTGCCGACAAAGTCTTGTGCCATGC 16060 Query 273895 TCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATAT 273954 ||| || ||| | || || |||||||||||| |||||| ||| || | || | Sbjct 16061 CCACAATCGTCTGCACCAGCGACTGCTCGCCGTGGTGGTAGGCGGAGTGCTCCGAGACGT 16120 Query 273955 AACCACTGAACTGAGCAACCTTCACATCGC-TCGTC-AAGTTTCGCTTGAATGCGGAATA 274012 |||| | ||| | ||||| ||||| | | | | ||| |||||||| |||| | Sbjct 16121 AACCGGACAGCTGGACCACCTT--GATCGCGTTGACGAGGTTGCGCTTGAAGCAGGAAAA 16178 Query 274013 CAACACCTTCCGCTGCGAGGGCTTGAACCCATCAA-CGACCGAT-GGAATACTGCGTTCC 274070 | | ||| |||||| |||||||| || |||| || || | || || ||||| || Sbjct 16179 GAGAATCTTGCGCTGCCCAGGCTTGAAGCCGTCAATCG--CGCTCGGGATGCTGCGCTCG 16236 Query 274071 AAATCATACCGA--GAGAACAAAATCAGTTCCTTGTCAATGAAGTC 274114 | || ||| ||||| | |||||| ||||| || | ||||| Sbjct 16237 CAGTC--TGCGATGGAGAAGAGAATCAGCTCCTTATCCACAAAGTC 16280 >SEQ11243 Length=5724 Score = 98.7 bits (108), Expect = 2e-15 Identities = 194/280 (69%), Gaps = 8/280 (3%) Strand=Plus/Minus Query 273774 AGTTTCGTGAAAATGTA-CCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACC 273832 ||||||||||| ||||| | ||| | || ||||| || ||| ||| | | ||| || Sbjct 3151 AGTTTCGTGAAGATGTAGCGCGGCGC-GGCGTGGTCGTTACCAAGCTGCTGACGCGAGCC 3093 Query 273833 AAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAA--TCCTGAGCC 273890 ||||| ||||| || | ||| || |||||||||| ||| ||||| | ||| ||| Sbjct 3092 GAACTGGCCCTCCGGGACGAGCAGATTGATGTTGTTGCCACC--CGTAAAGTTCTGCGCC 3035 Query 273891 ATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCG 273950 || |||||||| ||| |||| || || |||| |||||||| ||||| | || | | Sbjct 3034 ATCTTCACGATGGTCTCCTGCAGCGACGCCTCTCCGTGGTGGAAGGCGGAGACCTCCGAG 2975 Query 273951 ATATAACCACTGAACTGAGCAACCTTCACATCGCTCG-TCAAGTTTCGCTTGAATGCGGA 274009 || || || || ||| || |||||| | | |||| | || ||||| | | Sbjct 2974 ATGTAGCCGGAGAGCTGCGCCACCTTCGC-TGCCTCGCTGCTGTGCCGCTTCAGCATCGC 2916 Query 274010 ATACAACACCTTCCGCTGCGAGGGCTTGAACCCATCAACG 274049 |||| | || |||||||||||||||| || || ||| Sbjct 2915 CCACAAAATTTTACGCTGCGAGGGCTTGAGGCCGTCGACG 2876 >SEQ11242 Length=6155 Score = 98.7 bits (108), Expect = 2e-15 Identities = 194/280 (69%), Gaps = 8/280 (3%) Strand=Plus/Plus Query 273774 AGTTTCGTGAAAATGTA-CCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACC 273832 ||||||||||| ||||| | ||| | || ||||| || ||| ||| | | ||| || Sbjct 1933 AGTTTCGTGAAGATGTAGCGCGGCGC-GGCGTGGTCGTTACCAAGCTGCTGACGCGAGCC 1991 Query 273833 AAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAA--TCCTGAGCC 273890 ||||| ||||| || | ||| || |||||||||| ||| ||||| | ||| ||| Sbjct 1992 GAACTGGCCCTCCGGGACGAGCAGATTGATGTTGTTGCCACC--CGTAAAGTTCTGCGCC 2049 Query 273891 ATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCG 273950 || |||||||| ||| |||| || || |||| |||||||| ||||| | || | | Sbjct 2050 ATCTTCACGATGGTCTCCTGCAGCGACGCCTCTCCGTGGTGGAAGGCGGAGACCTCCGAG 2109 Query 273951 ATATAACCACTGAACTGAGCAACCTTCACATCGCTCG-TCAAGTTTCGCTTGAATGCGGA 274009 || || || || ||| || |||||| | | |||| | || ||||| | | Sbjct 2110 ATGTAGCCGGAGAGCTGCGCCACCTTCGC-TGCCTCGCTGCTGTGCCGCTTCAGCATCGC 2168 Query 274010 ATACAACACCTTCCGCTGCGAGGGCTTGAACCCATCAACG 274049 |||| | || |||||||||||||||| || || ||| Sbjct 2169 CCACAAAATTTTACGCTGCGAGGGCTTGAGGCCGTCGACG 2208 >SEQ11241 Length=6144 Score = 98.7 bits (108), Expect = 2e-15 Identities = 194/280 (69%), Gaps = 8/280 (3%) Strand=Plus/Plus Query 273774 AGTTTCGTGAAAATGTA-CCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACC 273832 ||||||||||| ||||| | ||| | || ||||| || ||| ||| | | ||| || Sbjct 1933 AGTTTCGTGAAGATGTAGCGCGGCGC-GGCGTGGTCGTTACCAAGCTGCTGACGCGAGCC 1991 Query 273833 AAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAA--TCCTGAGCC 273890 ||||| ||||| || | ||| || |||||||||| ||| ||||| | ||| ||| Sbjct 1992 GAACTGGCCCTCCGGGACGAGCAGATTGATGTTGTTGCCACC--CGTAAAGTTCTGCGCC 2049 Query 273891 ATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCG 273950 || |||||||| ||| |||| || || |||| |||||||| ||||| | || | | Sbjct 2050 ATCTTCACGATGGTCTCCTGCAGCGACGCCTCTCCGTGGTGGAAGGCGGAGACCTCCGAG 2109 Query 273951 ATATAACCACTGAACTGAGCAACCTTCACATCGCTCG-TCAAGTTTCGCTTGAATGCGGA 274009 || || || || ||| || |||||| | | |||| | || ||||| | | Sbjct 2110 ATGTAGCCGGAGAGCTGCGCCACCTTCGC-TGCCTCGCTGCTGTGCCGCTTCAGCATCGC 2168 Query 274010 ATACAACACCTTCCGCTGCGAGGGCTTGAACCCATCAACG 274049 |||| | || |||||||||||||||| || || ||| Sbjct 2169 CCACAAAATTTTACGCTGCGAGGGCTTGAGGCCGTCGACG 2208 >seq1102 Length=5703 Score = 98.7 bits (108), Expect = 2e-15 Identities = 194/280 (69%), Gaps = 8/280 (3%) Strand=Plus/Plus Query 273774 AGTTTCGTGAAAATGTA-CCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACC 273832 ||||||||||| ||||| | ||| | || ||||| || ||| ||| | | ||| || Sbjct 2553 AGTTTCGTGAAGATGTAGCGCGGCGC-GGCGTGGTCGTTACCAAGCTGCTGACGCGAGCC 2611 Query 273833 AAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAA--TCCTGAGCC 273890 ||||| ||||| || | ||| || |||||||||| ||| ||||| | ||| ||| Sbjct 2612 GAACTGGCCCTCCGGGACGAGCAGATTGATGTTGTTGCCACC--CGTAAAGTTCTGCGCC 2669 Query 273891 ATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCG 273950 || |||||||| ||| |||| || || |||| |||||||| ||||| | || | | Sbjct 2670 ATCTTCACGATGGTCTCCTGCAGCGACGCCTCTCCGTGGTGGAAGGCGGAGACCTCCGAG 2729 Query 273951 ATATAACCACTGAACTGAGCAACCTTCACATCGCTCG-TCAAGTTTCGCTTGAATGCGGA 274009 || || || || ||| || |||||| | | |||| | || ||||| | | Sbjct 2730 ATGTAGCCGGAGAGCTGCGCCACCTTCGC-TGCCTCGCTGCTGTGCCGCTTCAGCATCGC 2788 Query 274010 ATACAACACCTTCCGCTGCGAGGGCTTGAACCCATCAACG 274049 |||| | || |||||||||||||||| || || ||| Sbjct 2789 CCACAAAATTTTACGCTGCGAGGGCTTGAGGCCGTCGACG 2828 >seq8796 Length=7791 Score = 95.1 bits (104), Expect = 3e-14 Identities = 149/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 230193 GAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGG 230252 |||||||| |||||||| | || || || ||||||||||| || || || ||| | Sbjct 7555 GAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAACGCGGAGCTGATGTCG 7614 Query 230253 CAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTAT 230312 || || ||||| ||||| || || || | | ||| |||| ||| ||||| || Sbjct 7615 CAGTACATCGAGTTCGTTGCGGACCGGCTGCTGGTGTCGCTGGGGCTGGAGAAGCACTAC 7674 Query 230313 AACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTC 230372 ||| | | | ||||||| || |||||| | || || || ||||| || || |||||| Sbjct 7675 AACGTGACGCAGCCCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 7734 Query 230373 TTCGAAAAGCGTGTCAGCGATTATCA-AAGGC 230403 ||||| ||| || |||| || || ||||| Sbjct 7735 TTCGAGAAGAAGGTTGGCGAGTACCAGAAGGC 7766 >seq6209 Length=3470 Score = 95.1 bits (104), Expect = 3e-14 Identities = 149/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 230193 GAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGG 230252 |||||||| |||||||| | || || || ||||||||||| || || || ||| | Sbjct 453 GAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAACGCGGAGCTGATGTCG 512 Query 230253 CAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTAT 230312 || || ||||| ||||| || || || | | ||| |||| ||| ||||| || Sbjct 513 CAGTACATCGAGTTCGTTGCGGACCGGCTGCTGGTGTCGCTGGGGCTGGAGAAGCACTAC 572 Query 230313 AACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTC 230372 ||| | | | ||||||| || |||||| | || || || ||||| || || |||||| Sbjct 573 AACGTGACGCAGCCCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 632 Query 230373 TTCGAAAAGCGTGTCAGCGATTATCA-AAGGC 230403 ||||| ||| || |||| || || ||||| Sbjct 633 TTCGAGAAGAAGGTTGGCGAGTACCAGAAGGC 664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046537587235582