Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq3668 152 4e-32 SEQ14990 149 5e-31 seq6451 145 5e-30 seq5330 98.7 7e-16 >seq3668 Length=3103 Score = 152 bits (168), Expect = 4e-32 Identities = 177/236 (75%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || || | ||| | || ||| ||||| ||||| |||||| ||||||||||| || Sbjct 158 ATGCCACCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCC 217 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 ||||| ||| | || ||||||||||| ||||| ||||||| |||||||| || | Sbjct 218 GCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGC 277 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| |||||| |||| | |||| | ||||||||| | || Sbjct 278 GGGATGCCCTCCTTGTCCTGAATCTTCGCCTTC-ACGTTCTCGATGGTGTCGCTCGCCTC 336 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGT 44342 ||||| | | |||||||| || || ||||||||||||||||| |||||||||| Sbjct 337 GACCTCGAGGGCGATCGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCATGATGT 392 >SEQ14990 Length=15354 Score = 149 bits (164), Expect = 5e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||| ||||| ||||| |||||| ||||||||||| || ||| Sbjct 9180 CCACCGCGCAGGCGCAGCACNAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 9121 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| || || ||||||| |||||||| || | || Sbjct 9120 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 9061 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| |||||| ||||| |||| | || |||||| || || || Sbjct 9060 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCAC-GTTCTCGATCGTGTCGCTGGCCTCGAC 9002 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 ||||| || ||| ||||| || || || |||||||||||||| |||||||| Sbjct 9001 CTCCAGCGCAATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGAT 8951 >seq6451 Length=1481 Score = 145 bits (160), Expect = 5e-30 Identities = 165/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 || ||| ||||| ||||| |||||| ||||||||||| || ||||| ||| | || Sbjct 5 CAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTC 64 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 ||||||||||| ||||||||||||| |||||||| || | || | || ||||| || Sbjct 65 TTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTC 124 Query 44245 CGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 | |||||| |||| | |||| | ||||||||| | || ||||| | | |||| Sbjct 125 CTGAATCTTCGCCTTC-ACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCG 183 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGT 44342 |||| || || ||||||||||| ||||| |||||| ||| Sbjct 184 TCTTACCGGTCAGGGTCTTCACAAAGATCTGCATGGTGT 222 >seq5330 Length=12009 Score = 98.7 bits (108), Expect = 7e-16 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || || | ||| | || ||| ||||| ||||| |||||| ||||||||||| || Sbjct 157 ATGCCACCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCC 98 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 ||||| ||| | || ||||||||||| ||||| ||||||| |||||||| || | Sbjct 97 GCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGC 38 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCA 44261 || | || ||||| ||| |||||| ||||| Sbjct 37 GGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCA 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359924444471361