Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216535.1_202017-07-11] 15,033 sequences; 67,441,112 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3668 168 6e-37 SEQ14990 167 2e-36 seq6451 150 2e-31 seq5330 125 7e-24 >seq3668 Length=3103 Score = 168 bits (186), Expect = 6e-37 Identities = 177/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | ||| || |||||||| ||||||||| ||||| ||||| | Sbjct 160 GCCACCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 219 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| | || || ||||||||||||||||| ||||||||||| ||||||| || Sbjct 220 GAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGG 279 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| | || | ||||| | | |||||||||| ||| | Sbjct 280 GATGCCCTCCTTGTCC-TGAATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGA 338 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | | ||||| ||||| ||||| ||||| ||||| ||||||||| Sbjct 339 CCTCGAGGGCGATCGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCATG 388 >SEQ14990 Length=15354 Score = 167 bits (184), Expect = 2e-36 Identities = 180/235 (77%), Gaps = 3/235 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | ||| || |||||||| ||||||||| ||||| ||||| | Sbjct 9181 GCCACCGCGCAGGCGCAGCACNAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 9122 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| | || || ||||||||||| ||||| ||||||||||| ||||||| || Sbjct 9121 GAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGG 9062 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| | || | ||||| | | |||||||| | ||| | Sbjct 9061 GATGCCCTCCTTGTCC-TGAATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCGA 9003 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG-TTAT 41867 |||||| || || || || || ||||||||||| ||||| ||||||||| |||| Sbjct 9002 CCTCCAGCGCAATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGATTAT 8948 >seq6451 Length=1481 Score = 150 bits (166), Expect = 2e-31 Identities = 162/212 (76%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||| || |||||||| ||||||||| ||||| ||||| | ||| ||||| | || || Sbjct 8 CACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCTTC 67 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 |||||||||||||| || ||||||||||| ||||||| || | || |||||||||| | Sbjct 68 CAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC-T 126 Query 41773 GATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 || | || | ||||| | | |||||||||| ||| ||||| | | ||||| | Sbjct 127 GAATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCGTCT 186 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| ||||| ||||| || || ||||||||| Sbjct 187 TACCGGTCAGGGTCTTCACAAAGATCTGCATG 218 >seq5330 Length=12009 Score = 125 bits (138), Expect = 7e-24 Identities = 121/153 (79%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | ||| || |||||||| ||||||||| ||||| ||||| | Sbjct 155 GCCACCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 96 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| | || || ||||||||||||||||| ||||||||||| ||||||| || Sbjct 95 GAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGG 36 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCA 41786 | || |||||||||| ||| | || | ||||| Sbjct 35 GATGCCCTCCTTGTCC-TGAATCTTCGCCTTCA 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462217127299600