Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11] 10,059 sequences; 49,951,730 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq9046 93.3 9e-14 seq9045 93.3 9e-14 seq5564 93.3 9e-14 seq1924 93.3 9e-14 >seq9046 Length=27123 Score = 93.3 bits (102), Expect = 9e-14 Identities = 124/168 (74%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 281736 AGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCA 281795 |||||||||||||| || | | |||||||| |||||| |||| | | ||| || Sbjct 25614 AGTTTCGTGAAGATGTAGCGCGGCGCGGCGTGGTCGTTACCAAGCTGCTGACGCGAGCCG 25555 Query 281796 AACTGACCCTCCGGCAACAACCAG-TTAATGTTATTGCTCCCGACGTAA--TCCTGAGCC 281852 ||||| |||||||| || | ||| || ||||| |||| || ||||| | ||| ||| Sbjct 25554 AACTGGCCCTCCGG-GACGAGCAGATTGATGTTGTTGCCACC--CGTAAAGTTCTGCGCC 25498 Query 281853 AGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCG 281900 | || ||||| ||| |||| ||||| |||| |||||||| ||||| Sbjct 25497 ATCTTCACGATGGTCTCCTGCAGCGACGCCTCTCCGTGGTGGAAGGCG 25450 >seq9045 Length=27112 Score = 93.3 bits (102), Expect = 9e-14 Identities = 124/168 (74%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 281736 AGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCA 281795 |||||||||||||| || | | |||||||| |||||| |||| | | ||| || Sbjct 25603 AGTTTCGTGAAGATGTAGCGCGGCGCGGCGTGGTCGTTACCAAGCTGCTGACGCGAGCCG 25544 Query 281796 AACTGACCCTCCGGCAACAACCAG-TTAATGTTATTGCTCCCGACGTAA--TCCTGAGCC 281852 ||||| |||||||| || | ||| || ||||| |||| || ||||| | ||| ||| Sbjct 25543 AACTGGCCCTCCGG-GACGAGCAGATTGATGTTGTTGCCACC--CGTAAAGTTCTGCGCC 25487 Query 281853 AGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCG 281900 | || ||||| ||| |||| ||||| |||| |||||||| ||||| Sbjct 25486 ATCTTCACGATGGTCTCCTGCAGCGACGCCTCTCCGTGGTGGAAGGCG 25439 >seq5564 Length=1640 Score = 93.3 bits (102), Expect = 9e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 230443 CGCCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGC 230502 || || || ||||||||||| || || ||| ||||||||||| ||||| || ||||| Sbjct 22 CGGCTGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTTGCGGACCGG 81 Query 230503 ATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATG 230562 | | || | || || ||||| |||||| | | | ||||| | || ||| Sbjct 82 CTGCTGGTGTCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCCTTCGACTTCATG 141 Query 230563 GAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAG 230622 ||| | || ||||| || || ||||| ||||||||||| ||| || | || || ||| Sbjct 142 GAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTTGGCGAGTACCAG 201 Query 230623 AGGCCTGGTGTGATGA 230638 | | |||| ||||||| Sbjct 202 AAGGCTGGCGTGATGA 217 >seq1924 Length=25061 Score = 93.3 bits (102), Expect = 9e-14 Identities = 124/168 (74%), Gaps = 6/168 (4%) Strand=Plus/Plus Query 281736 AGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCA 281795 |||||||||||||| || | | |||||||| |||||| |||| | | ||| || Sbjct 2561 AGTTTCGTGAAGATGTAGCGCGGCGCGGCGTGGTCGTTACCAAGCTGCTGACGCGAGCCG 2620 Query 281796 AACTGACCCTCCGGCAACAACCAG-TTAATGTTATTGCTCCCGACGTAA--TCCTGAGCC 281852 ||||| |||||||| || | ||| || ||||| |||| || ||||| | ||| ||| Sbjct 2621 AACTGGCCCTCCGG-GACGAGCAGATTGATGTTGTTGCCACC--CGTAAAGTTCTGCGCC 2677 Query 281853 AGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCG 281900 | || ||||| ||| |||| ||||| |||| |||||||| ||||| Sbjct 2678 ATCTTCACGATGGTCTCCTGCAGCGACGCCTCTCCGTGGTGGAAGGCG 2725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057687666651170