Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11] 10,059 sequences; 49,951,730 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq9923 116 3e-21 seq5028 98.7 8e-16 seq9960 89.7 4e-13 >seq9923 Length=5125 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||| | |||| || |||||||| || ||||| |||||||| Sbjct 1219 CCACCGCGCAGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 1278 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||||||||| ||||| ||| | || || | |||||||||| || Sbjct 1279 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 1338 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||||| ||||| | ||| || || | || ||| Sbjct 1339 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCGACC 1398 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| | ||||||||||||||| | ||| || || || || ||||| Sbjct 1399 TCCAGCGCAATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1445 >seq5028 Length=838 Score = 98.7 bits (108), Expect = 8e-16 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 20955 CGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTT 21014 ||||| | ||||| | |||| || |||||||| || ||||| |||||||| || || Sbjct 837 CGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTG 778 Query 21015 TGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCT 21074 || | ||||||||||| ||||| ||| | || || | |||||||||| || | ||| Sbjct 777 CGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCC 718 Query 21075 TCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACG 21134 |||||||| ||||| ||||| | ||| || || | | ||| || | | Sbjct 717 TCCTTGTCCTGNATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGG 658 Query 21135 GTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 | || ||||| ||||| | ||| || || || || ||||| Sbjct 657 GCGATCGTCTTACCGGTCAGCGTCTTCACGAAGATCTGCAT 617 >seq9960 Length=1600 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||| | |||| || |||||||| || ||||| |||||||| Sbjct 715 CCACCGCGCAGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 656 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||||||||| ||||| || | || || | |||||| ||| || Sbjct 655 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGATCCGGCGGA 596 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| ||||| | ||| || || | | ||| Sbjct 595 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACC 536 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || || ||||| ||||| | || || || || || ||||| Sbjct 535 TCGAGGGCGATCGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422207433529244