Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11] 10,059 sequences; 49,951,730 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq9923 158 1e-33 seq5028 152 5e-32 seq9960 149 6e-31 seq5244 82.4 8e-11 >seq9923 Length=5125 Score = 158 bits (174), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| ||||| | | || ||||| |||| | Sbjct 1445 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATTGCGCTGGAGGTCGAGGCCAGC 1386 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || |||| ||||| ||||||||||| ||||||| Sbjct 1385 GACACGATCGAGAACG-TGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCA 1327 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| |||||||| || | ||||| ||| |||||||| Sbjct 1326 GCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAA 1267 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | |||||||| || ||| ||||| || | || ||| Sbjct 1266 CATCCAGAAGGAGTCGACGCTGCACCTTGTGCTGCGCCTGCGCGGTGGC 1218 >seq5028 Length=838 Score = 152 bits (168), Expect = 5e-32 Identities = 167/220 (76%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || || || || ||| || |||| ||||| || | | Sbjct 617 ATGCAGATCTTCGTGAAGACGCTGACCGGTAAGACGATCGCCCTCGAGGTCGAGGCGAGC 676 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| ||||||||||| ||||||| Sbjct 677 GACACCATCGAGAACG-TGAAGGCGAAGATNCAGGACAAGGAGGGCATCCCGCCGGACCA 735 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| |||||||| || | ||||| || |||||||| Sbjct 736 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTTGCGGACTACAA 795 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTG 40908 ||||||||||||| | |||||||| || ||| ||||| || Sbjct 796 CATCCAGAAGGAGTCGACGCTGCACCTCGTGCTGCGCCTG 835 >seq9960 Length=1600 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || || ||| || |||| ||||| || | | Sbjct 489 ATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACGATCGCCCTCGAGGTCGAGGCGAGC 548 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| |||||||| || |||| || Sbjct 549 GACACCATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGATCA 607 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | ||||| ||| |||||||| Sbjct 608 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAA 667 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | |||||||| || ||| ||||| || | || ||| Sbjct 668 CATCCAGAAGGAGTCGACGCTGCACCTTGTGCTGCGCCTGCGCGGTGGC 716 >seq5244 Length=1098 Score = 82.4 bits (90), Expect = 8e-11 Identities = 100/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || || ||| || |||| ||||| || | | Sbjct 796 ATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACGATCGCCCTCGAGGTCGAGGCGAGC 855 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || |||| ||||| ||||||||||| ||||||| Sbjct 856 GACACCATCGAGAACG-TGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCA 914 Query 40809 GCAACGACTCATCT 40822 ||| || || |||| Sbjct 915 GCAGCGCCTGATCT 928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515154417625840