Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11] 10,059 sequences; 49,951,730 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq9960 120 3e-22 seq9923 105 6e-18 seq5028 105 6e-18 seq6969 95.1 1e-14 seq6968 95.1 1e-14 seq6967 95.1 1e-14 seq5244 86.0 5e-12 >seq9960 Length=1600 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | || ||| | ||| | || ||||| || || |||||||| || Sbjct 715 CCACCGCGCAGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 656 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||| ||||| || |||||| |||| || ||||||||||| || || Sbjct 655 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGATCCGGCGGA 596 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| || || || || | |||| |||||| | ||||||| Sbjct 595 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACC 536 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 |||| || | ||| || |||||||| || || || || |||||||||| Sbjct 535 TCGAGGGCGATCGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCATGG 487 >seq9923 Length=5125 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | || ||| | ||| | || ||||| || || |||||||| || Sbjct 1219 CCACCGCGCAGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 1278 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||| ||||| || ||||| |||| || |||||||| || || || Sbjct 1279 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 1338 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| ||| || || || | |||| ||||| || ||||||| Sbjct 1339 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCGACC 1398 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || | | | || ||||||||||| || || || || ||||||||| Sbjct 1399 TCCAGCGCAATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 1446 >seq5028 Length=838 Score = 105 bits (116), Expect = 6e-18 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||| | ||| | || ||||| || || |||||||| || | ||||| || Sbjct 829 CAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTC 770 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || || || |||| || |||||||| || || || |||||||||||||| Sbjct 769 CTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTC 710 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | |||| |||||| | ||||||||||| || | ||| Sbjct 709 CTGNATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCGT 650 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 || |||||||| || || || || |||||||||| Sbjct 649 CTTACCGGTCAGCGTCTTCACGAAGATCTGCATGG 615 >seq6969 Length=25347 Score = 95.1 bits (104), Expect = 1e-14 Identities = 314/483 (65%), Gaps = 14/483 (3%) Strand=Plus/Minus Query 132879 TCGACGGTAAACTTTGTGGCCTGAGCGGCGGGTTTTGTGCGCAAATAATACATGCCCGTT 132938 || || |||||||| | || | ||||| | || ||||||| || |||| ||||| Sbjct 11895 TCCACCGTAAACTTAATCGCATCGGCGGCCGCCTTCGTGCGCAGGTAGTACACACCCGTC 11836 Query 132939 TTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGACACCA---CCGAGTAAGTGGGT 132995 ||||| |||||||| ||| ||| | || || | | ||||| ||||| Sbjct 11835 TTCAGACCCGACTCCCACGTGTAGAAGAGCATCGACGTGATCTGGCCCGAG---GTGGGG 11779 Query 132996 -TCGGCGACAAATAAATTCAGCGATTGACTCTGATCTATGAAAGGAGCACGGTCGGCGGC 133054 || || | || | |||||||| || ||| || ||| | | | |||||| ||| Sbjct 11778 CTCTGC-AGGAAGAGGTTCAGCGACTGGGACTGGTCGATGTACTGGCCGCGGTCGCGGGC 11720 Query 133055 CATGTTTATTA---TACACTTTGATTTGATCTCCCATGCCGTCTTGAAGAGATTCTTGAC 133111 ||||| || | | | || | ||||||||| |||| | | || | ||| | Sbjct 11719 CATGTCGATCAGCTTGCGCTGCGG---GATCTCCCACACCGTGCGGTACAGCTCCTTCAG 11663 Query 133112 ATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTCGGCCAAAATCTTGTTGCG 133171 | | || || ||| ||| || ||||||| ||||| | || | |||| |||||| Sbjct 11662 GTCGTCCGGGATGCTGTCGATGGTCAGCACGGAGCCGTTGTAGGAGATGATCTCGTTGCG 11603 Query 133172 CAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGACGAGATACTGGTTGACCAC 133231 || | | | | | | || | | || || | | ||||| |||| ||| ||||| Sbjct 11602 CATCGTCTCATTCCACAGGCCGCGCTTAATGAGGTCCATCACGAGGTACTTGTTCACCAC 11543 Query 133232 TTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACGGTTCGAAAGA 133291 | ||||||||| || ||||| | | ||| | ||||| ||||| || ||||| | Sbjct 11542 CGGGAACTCGCCGCTCAGCACGCGACGAACATAGATGTTCGAGGTGAAAGGCTCGAAGCA 11483 Query 133292 TTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACCAACAAAGA 133351 |||||||||||||| || |||| |||| || |||||||| ||| | || | ||| Sbjct 11482 CTCGTTGTTGCCGAGGATTTGCGAGGTCGAGGCGGTGGGCATCGGCGCAAGCAGGAGAGA 11423 Query 133352 GTT 133354 ||| Sbjct 11422 GTT 11420 >seq6968 Length=12362 Score = 95.1 bits (104), Expect = 1e-14 Identities = 314/483 (65%), Gaps = 14/483 (3%) Strand=Plus/Minus Query 132879 TCGACGGTAAACTTTGTGGCCTGAGCGGCGGGTTTTGTGCGCAAATAATACATGCCCGTT 132938 || || |||||||| | || | ||||| | || ||||||| || |||| ||||| Sbjct 11895 TCCACCGTAAACTTAATCGCATCGGCGGCCGCCTTCGTGCGCAGGTAGTACACACCCGTC 11836 Query 132939 TTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGACACCA---CCGAGTAAGTGGGT 132995 ||||| |||||||| ||| ||| | || || | | ||||| ||||| Sbjct 11835 TTCAGACCCGACTCCCACGTGTAGAAGAGCATCGACGTGATCTGGCCCGAG---GTGGGG 11779 Query 132996 -TCGGCGACAAATAAATTCAGCGATTGACTCTGATCTATGAAAGGAGCACGGTCGGCGGC 133054 || || | || | |||||||| || ||| || ||| | | | |||||| ||| Sbjct 11778 CTCTGC-AGGAAGAGGTTCAGCGACTGGGACTGGTCGATGTACTGGCCGCGGTCGCGGGC 11720 Query 133055 CATGTTTATTA---TACACTTTGATTTGATCTCCCATGCCGTCTTGAAGAGATTCTTGAC 133111 ||||| || | | | || | ||||||||| |||| | | || | ||| | Sbjct 11719 CATGTCGATCAGCTTGCGCTGCGG---GATCTCCCACACCGTGCGGTACAGCTCCTTCAG 11663 Query 133112 ATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTCGGCCAAAATCTTGTTGCG 133171 | | || || ||| ||| || ||||||| ||||| | || | |||| |||||| Sbjct 11662 GTCGTCCGGGATGCTGTCGATGGTCAGCACGGAGCCGTTGTAGGAGATGATCTCGTTGCG 11603 Query 133172 CAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGACGAGATACTGGTTGACCAC 133231 || | | | | | | || | | || || | | ||||| |||| ||| ||||| Sbjct 11602 CATCGTCTCATTCCACAGGCCGCGCTTAATGAGGTCCATCACGAGGTACTTGTTCACCAC 11543 Query 133232 TTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACGGTTCGAAAGA 133291 | ||||||||| || ||||| | | ||| | ||||| ||||| || ||||| | Sbjct 11542 CGGGAACTCGCCGCTCAGCACGCGACGAACATAGATGTTCGAGGTGAAAGGCTCGAAGCA 11483 Query 133292 TTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACCAACAAAGA 133351 |||||||||||||| || |||| |||| || |||||||| ||| | || | ||| Sbjct 11482 CTCGTTGTTGCCGAGGATTTGCGAGGTCGAGGCGGTGGGCATCGGCGCAAGCAGGAGAGA 11423 Query 133352 GTT 133354 ||| Sbjct 11422 GTT 11420 >seq6967 Length=22635 Score = 95.1 bits (104), Expect = 1e-14 Identities = 314/483 (65%), Gaps = 14/483 (3%) Strand=Plus/Plus Query 132879 TCGACGGTAAACTTTGTGGCCTGAGCGGCGGGTTTTGTGCGCAAATAATACATGCCCGTT 132938 || || |||||||| | || | ||||| | || ||||||| || |||| ||||| Sbjct 304 TCCACCGTAAACTTAATCGCATCGGCGGCCGCCTTCGTGCGCAGGTAGTACACACCCGTC 363 Query 132939 TTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGACACCA---CCGAGTAAGTGGGT 132995 ||||| |||||||| ||| ||| | || || | | ||||| ||||| Sbjct 364 TTCAGACCCGACTCCCACGTGTAGAAGAGCATCGACGTGATCTGGCCCGAG---GTGGGG 420 Query 132996 -TCGGCGACAAATAAATTCAGCGATTGACTCTGATCTATGAAAGGAGCACGGTCGGCGGC 133054 || || | || | |||||||| || ||| || ||| | | | |||||| ||| Sbjct 421 CTCTGC-AGGAAGAGGTTCAGCGACTGGGACTGGTCGATGTACTGGCCGCGGTCGCGGGC 479 Query 133055 CATGTTTATTA---TACACTTTGATTTGATCTCCCATGCCGTCTTGAAGAGATTCTTGAC 133111 ||||| || | | | || | ||||||||| |||| | | || | ||| | Sbjct 480 CATGTCGATCAGCTTGCGCTGCGG---GATCTCCCACACCGTGCGGTACAGCTCCTTCAG 536 Query 133112 ATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTCGGCCAAAATCTTGTTGCG 133171 | | || || ||| ||| || ||||||| ||||| | || | |||| |||||| Sbjct 537 GTCGTCCGGGATGCTGTCGATGGTCAGCACGGAGCCGTTGTAGGAGATGATCTCGTTGCG 596 Query 133172 CAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGACGAGATACTGGTTGACCAC 133231 || | | | | | | || | | || || | | ||||| |||| ||| ||||| Sbjct 597 CATCGTCTCATTCCACAGGCCGCGCTTAATGAGGTCCATCACGAGGTACTTGTTCACCAC 656 Query 133232 TTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACGGTTCGAAAGA 133291 | ||||||||| || ||||| | | ||| | ||||| ||||| || ||||| | Sbjct 657 CGGGAACTCGCCGCTCAGCACGCGACGAACATAGATGTTCGAGGTGAAAGGCTCGAAGCA 716 Query 133292 TTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACCAACAAAGA 133351 |||||||||||||| || |||| |||| || |||||||| ||| | || | ||| Sbjct 717 CTCGTTGTTGCCGAGGATTTGCGAGGTCGAGGCGGTGGGCATCGGCGCAAGCAGGAGAGA 776 Query 133352 GTT 133354 ||| Sbjct 777 GTT 779 >seq5244 Length=1098 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 118606 AGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCT 118665 |||| || |||||||| || || || |||||||||||||| ||| || || || | Sbjct 928 AGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGT 869 Query 118666 GTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 118725 |||| |||||| | ||||||||||| || | ||| || |||||||| || || | Sbjct 868 TCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCGTCTTACCGGTCAGGGTCTTCA 809 Query 118726 CAAAAATCTGCATGG 118740 | || |||||||||| Sbjct 808 CGAAGATCTGCATGG 794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433777214968828