Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11] 10,059 sequences; 49,951,730 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq9923 113 5e-20 seq5028 100 3e-16 SEQ10018 89.7 6e-13 seq5223 89.7 6e-13 seq2164 89.7 6e-13 >seq9923 Length=5125 Score = 113 bits (124), Expect = 5e-20 Identities = 167/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010 ||||| || || | | |||| ||| | |||| || |||||| || || ||||| Sbjct 1213 TATTGGCCACCGCGCAGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAG 1272 Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 || || || || || | || || |||||||| ||||| || || || ||||||||||| Sbjct 1273 TCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCC 1332 Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGA 43129 | ||| | || |||||||||| ||| | || | || | || | | ||||||||| | Sbjct 1333 GGCGGGATGCCCTCCTTGTCC-TGAATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGC 1391 Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || | || ||||| ||||| || |||||||| || ||||| ||||| Sbjct 1392 CTCGACCTCCAGCGCAATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1445 >seq5028 Length=838 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||| | |||| || |||||| || || ||||| || || || || || | Sbjct 831 CGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCC 772 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || || || ||||||||||| | ||| | || ||||||| Sbjct 771 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 712 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| || || || | || | | |||||||||| || || |||| | ||| Sbjct 711 TCCTGNATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATC 652 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || |||||||| || ||||| ||||| Sbjct 651 GTCTTACCGGTCAGCGTCTTCACGAAGATCTGCAT 617 >SEQ10018 Length=111740 Score = 89.7 bits (98), Expect = 6e-13 Identities = 71/85 (84%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 60051 TTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 60110 ||| ||||||| ||| | ||| |||||| |||||| |||| |||||||||||||||| Sbjct 11256 TTTTTGAAAAAGCTTCCC---GGCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGG 11312 Query 60111 ACATACTCACCACTATACTACCGAG 60135 ||||| ||||||||||||||||| Sbjct 11313 GTATACTAACCACTATACTACCGAG 11337 >seq5223 Length=39064 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| |||| |||||||||||||||| ||||| |||||||||||| Sbjct 116 CGGCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTATACTA 175 Query 60131 CCGAGGATTGAA 60142 ||||| | |||| Sbjct 176 CCGAGAACTGAA 187 >seq2164 Length=2447 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| |||| |||||||||||||||| ||||| |||||||||||| Sbjct 1108 CGGCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTATACTA 1049 Query 60131 CCGAGGATTGAA 60142 ||||| | |||| Sbjct 1048 CCGAGAACTGAA 1037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571745701084520