Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11] 10,059 sequences; 49,951,730 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq9923 125 5e-24 seq9960 107 1e-18 seq5028 107 1e-18 >seq9923 Length=5125 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | |||||| ||||| | || || ||||| ||||||||||| | Sbjct 1219 CCACCGCGCAGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 1278 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGG 34281 ||| ||| | || |||| ||||||||| || || || || |||||||||| || |||| Sbjct 1279 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 1338 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | | | |||| ||| | | ||||| Sbjct 1339 -ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCGAC 1397 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || ||||| |||||||| || || ||||| ||||||||||| Sbjct 1398 CTCCAGCGCAATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1445 >seq9960 Length=1600 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | |||||| ||||| | || || ||||| ||||||||||| | Sbjct 715 CCACCGCGCAGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 656 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || |||| ||||||||| ||||| || || |||||||| || || Sbjct 655 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGATCCGGCGGA 596 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | || | ||| ||| ||||| Sbjct 595 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACC 536 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | | ||| || || ||||| || || ||||| ||||||||||| Sbjct 535 TCGAGGGCGATCGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 489 >seq5028 Length=838 Score = 107 bits (118), Expect = 1e-18 Identities = 159/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 34168 GCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTG 34227 |||||| | |||||| ||||| | || || ||||| ||||||||||| | ||| Sbjct 838 GCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGT 779 Query 34228 ACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGC 34286 ||| | || |||| ||||||||| || || || || ||||||||||| | |||| | || Sbjct 778 GCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG-ATGC 720 Query 34287 TCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCA 34346 ||||||||| ||||| ||| | | | || | ||| ||| ||||| || | Sbjct 719 CCTCCTTGTCCTGNATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGA 660 Query 34347 CCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | ||| || || ||||| || || ||||| ||||||||||| Sbjct 659 GGGCGATCGTCTTACCGGTCAGCGTCTTCACGAAGATCTGCAT 617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323032393291040