Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11] 10,059 sequences; 49,951,730 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq6969 98.7 2e-15 seq6968 98.7 2e-15 seq6967 98.7 2e-15 >seq6969 Length=25347 Score = 98.7 bits (108), Expect = 2e-15 Identities = 553/867 (64%), Gaps = 30/867 (3%) Strand=Plus/Plus Query 248877 GATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGA 248936 ||| |||||||| ||||| | || |||| || || |||| || ||| | || Sbjct 10114 GATTGTGGAACGCCCGCAGCAGCTCTTCCTGCGCGTTGCCCTCGGCATCCACGTCGGCGA 10173 Query 248937 CATAGAGAGCGTGCTCGAGACGTAC-ACCGGAATGAGTGAACGCTGGATGACACATGCCA 248995 | | ||| ||||| ||||||||| | | || || | ||| | || || |||| Sbjct 10174 CCTCAAGAACGTGCGTGAGACGTACGATCTGA-TGTCGAAGGGCTTTTTCACGCACGCCA 10232 Query 248996 CACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTG 249055 | ||||| |||||||||||||| || || ||| ||||||||||||| || | | Sbjct 10233 CCCCGACCCTCTTCAACGCCGGCACGCCGAAGCCGCAGATGAGCTCGTGCTTCCTCGTCG 10292 Query 249056 CCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTT 249115 | | | |||||| | ||||| || || |||||||| || || || || Sbjct 10293 CGTCGAAGGACGACAGCATTGACGGGATCTACGACACGCTGAAGGAGTGCGCCGTCATCA 10352 Query 249116 CTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACA 249175 || || ||||| ||||| || ||| ||||||||| | || |||| Sbjct 10353 GCAAGGCGGCCGGCGGCATCGGCCTGCACGTGCACAACATCCGCTCCGCCGGCAGCTACA 10412 Query 249176 TCAAAGGTACAAATGGG--GTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTC 249233 || || || || || ||| | || | || || | || || || | Sbjct 10413 TCGCTGGCACGAACGGCACGTCGA--ACGGCCTGGTGCCGATGCTGCGCGTGTTCAACAA 10470 Query 249234 CACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTT 249290 ||| ||| | | | | |||||| ||| | || ||||| | |||||||| || | Sbjct 10471 CACGGCCCGCTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCATTTACCT 10530 Query 249291 GGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGA 249350 || |||||||||||| || || | |||||| |||| |||| |||||| || Sbjct 10531 CGAGCCGTGGCACGCCGACATCTTCGGCTTCCTGCTGCTGAAGCGCAACACCGGCAAGGA 10590 Query 249351 GCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCG 249410 | | | ||||| ||||||||||||| |||||| || ||||| |||||||| || Sbjct 10591 CGACCAGCGTGCGCGCGACCTCTTCTACGCGCTGTGGATCCCCGACCTGTTCATGAAGCG 10650 Query 249411 CGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCC--GTCCGACGCCCCGGACCTCATC 249468 ||| ||| || || | |||||||| | || || || ||||| |||| Sbjct 10651 CGTGAAGAGTGAGGGGAAGTGGACGCTGATGGACCCAAGTACG--TGCCCGGGTCTCAGT 10708 Query 249469 GATCTAC-ACGGCGCCGACTTCGACCAAGCCTATA--AGAAATACGAATCCAACGGCATC 249525 || || | |||||| || ||||| | |||| || || ||||| | | ||| | Sbjct 10709 GA-CTGCTACGGCGAGGAGTTCGAGC--GCCTGTACGAGCGCTACGAGGCGGAGGGCCGC 10765 Query 249526 GG---CAAGACAATCAAGGCTC-GGACCCTT--TTTGCGAAGGTGGTGGAGTCCCAGATA 249579 || |||| ||| |||| | ||| | ||||||| | | ||||| ||||| Sbjct 10766 GGAGTGCAGACGATCCAGGCACAGGAGGTGTGGTTTGCGA---TTCTCGAGTCGCAGATC 10822 Query 249580 GAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACG 249638 ||||| || | |||| | || | | ||| |||||||||||| |||| ||||| Sbjct 10823 GAGACCGGCGTCCCGT-TCATCCTCTACAAGGACGCGTGCAACAGCAAGTCGAACCAGAA 10881 Query 249639 GCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATACTCGTCCAA 249698 | | || || |||||| | || || ||||| | ||| | | | ||| |||| Sbjct 10882 GAACCTCGGCACCATCAAGTGCTCGAACCTCTGCACCGAGATTGTGGAGTACACGTCGCC 10941 Query 249699 GGAGGAGATTGCCGTCTGCAACCTGGC 249725 |||||||| || || |||||||| || Sbjct 10942 GGAGGAGACCGCGGTGTGCAACCTCGC 10968 >seq6968 Length=12362 Score = 98.7 bits (108), Expect = 2e-15 Identities = 553/867 (64%), Gaps = 30/867 (3%) Strand=Plus/Plus Query 248877 GATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGA 248936 ||| |||||||| ||||| | || |||| || || |||| || ||| | || Sbjct 10114 GATTGTGGAACGCCCGCAGCAGCTCTTCCTGCGCGTTGCCCTCGGCATCCACGTCGGCGA 10173 Query 248937 CATAGAGAGCGTGCTCGAGACGTAC-ACCGGAATGAGTGAACGCTGGATGACACATGCCA 248995 | | ||| ||||| ||||||||| | | || || | ||| | || || |||| Sbjct 10174 CCTCAAGAACGTGCGTGAGACGTACGATCTGA-TGTCGAAGGGCTTTTTCACGCACGCCA 10232 Query 248996 CACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTG 249055 | ||||| |||||||||||||| || || ||| ||||||||||||| || | | Sbjct 10233 CCCCGACCCTCTTCAACGCCGGCACGCCGAAGCCGCAGATGAGCTCGTGCTTCCTCGTCG 10292 Query 249056 CCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTT 249115 | | | |||||| | ||||| || || |||||||| || || || || Sbjct 10293 CGTCGAAGGACGACAGCATTGACGGGATCTACGACACGCTGAAGGAGTGCGCCGTCATCA 10352 Query 249116 CTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACA 249175 || || ||||| ||||| || ||| ||||||||| | || |||| Sbjct 10353 GCAAGGCGGCCGGCGGCATCGGCCTGCACGTGCACAACATCCGCTCCGCCGGCAGCTACA 10412 Query 249176 TCAAAGGTACAAATGGG--GTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTC 249233 || || || || || ||| | || | || || | || || || | Sbjct 10413 TCGCTGGCACGAACGGCACGTCGA--ACGGCCTGGTGCCGATGCTGCGCGTGTTCAACAA 10470 Query 249234 CACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTT 249290 ||| ||| | | | | |||||| ||| | || ||||| | |||||||| || | Sbjct 10471 CACGGCCCGCTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCATTTACCT 10530 Query 249291 GGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGA 249350 || |||||||||||| || || | |||||| |||| |||| |||||| || Sbjct 10531 CGAGCCGTGGCACGCCGACATCTTCGGCTTCCTGCTGCTGAAGCGCAACACCGGCAAGGA 10590 Query 249351 GCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCG 249410 | | | ||||| ||||||||||||| |||||| || ||||| |||||||| || Sbjct 10591 CGACCAGCGTGCGCGCGACCTCTTCTACGCGCTGTGGATCCCCGACCTGTTCATGAAGCG 10650 Query 249411 CGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCC--GTCCGACGCCCCGGACCTCATC 249468 ||| ||| || || | |||||||| | || || || ||||| |||| Sbjct 10651 CGTGAAGAGTGAGGGGAAGTGGACGCTGATGGACCCAAGTACG--TGCCCGGGTCTCAGT 10708 Query 249469 GATCTAC-ACGGCGCCGACTTCGACCAAGCCTATA--AGAAATACGAATCCAACGGCATC 249525 || || | |||||| || ||||| | |||| || || ||||| | | ||| | Sbjct 10709 GA-CTGCTACGGCGAGGAGTTCGAGC--GCCTGTACGAGCGCTACGAGGCGGAGGGCCGC 10765 Query 249526 GG---CAAGACAATCAAGGCTC-GGACCCTT--TTTGCGAAGGTGGTGGAGTCCCAGATA 249579 || |||| ||| |||| | ||| | ||||||| | | ||||| ||||| Sbjct 10766 GGAGTGCAGACGATCCAGGCACAGGAGGTGTGGTTTGCGA---TTCTCGAGTCGCAGATC 10822 Query 249580 GAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACG 249638 ||||| || | |||| | || | | ||| |||||||||||| |||| ||||| Sbjct 10823 GAGACCGGCGTCCCGT-TCATCCTCTACAAGGACGCGTGCAACAGCAAGTCGAACCAGAA 10881 Query 249639 GCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATACTCGTCCAA 249698 | | || || |||||| | || || ||||| | ||| | | | ||| |||| Sbjct 10882 GAACCTCGGCACCATCAAGTGCTCGAACCTCTGCACCGAGATTGTGGAGTACACGTCGCC 10941 Query 249699 GGAGGAGATTGCCGTCTGCAACCTGGC 249725 |||||||| || || |||||||| || Sbjct 10942 GGAGGAGACCGCGGTGTGCAACCTCGC 10968 >seq6967 Length=22635 Score = 98.7 bits (108), Expect = 2e-15 Identities = 553/867 (64%), Gaps = 30/867 (3%) Strand=Plus/Minus Query 248877 GATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGA 248936 ||| |||||||| ||||| | || |||| || || |||| || ||| | || Sbjct 2085 GATTGTGGAACGCCCGCAGCAGCTCTTCCTGCGCGTTGCCCTCGGCATCCACGTCGGCGA 2026 Query 248937 CATAGAGAGCGTGCTCGAGACGTAC-ACCGGAATGAGTGAACGCTGGATGACACATGCCA 248995 | | ||| ||||| ||||||||| | | || || | ||| | || || |||| Sbjct 2025 CCTCAAGAACGTGCGTGAGACGTACGATCTGA-TGTCGAAGGGCTTTTTCACGCACGCCA 1967 Query 248996 CACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTG 249055 | ||||| |||||||||||||| || || ||| ||||||||||||| || | | Sbjct 1966 CCCCGACCCTCTTCAACGCCGGCACGCCGAAGCCGCAGATGAGCTCGTGCTTCCTCGTCG 1907 Query 249056 CCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTT 249115 | | | |||||| | ||||| || || |||||||| || || || || Sbjct 1906 CGTCGAAGGACGACAGCATTGACGGGATCTACGACACGCTGAAGGAGTGCGCCGTCATCA 1847 Query 249116 CTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACA 249175 || || ||||| ||||| || ||| ||||||||| | || |||| Sbjct 1846 GCAAGGCGGCCGGCGGCATCGGCCTGCACGTGCACAACATCCGCTCCGCCGGCAGCTACA 1787 Query 249176 TCAAAGGTACAAATGGG--GTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTC 249233 || || || || || ||| | || | || || | || || || | Sbjct 1786 TCGCTGGCACGAACGGCACGTCGA--ACGGCCTGGTGCCGATGCTGCGCGTGTTCAACAA 1729 Query 249234 CACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTT 249290 ||| ||| | | | | |||||| ||| | || ||||| | |||||||| || | Sbjct 1728 CACGGCCCGCTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCATTTACCT 1669 Query 249291 GGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGA 249350 || |||||||||||| || || | |||||| |||| |||| |||||| || Sbjct 1668 CGAGCCGTGGCACGCCGACATCTTCGGCTTCCTGCTGCTGAAGCGCAACACCGGCAAGGA 1609 Query 249351 GCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCG 249410 | | | ||||| ||||||||||||| |||||| || ||||| |||||||| || Sbjct 1608 CGACCAGCGTGCGCGCGACCTCTTCTACGCGCTGTGGATCCCCGACCTGTTCATGAAGCG 1549 Query 249411 CGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCC--GTCCGACGCCCCGGACCTCATC 249468 ||| ||| || || | |||||||| | || || || ||||| |||| Sbjct 1548 CGTGAAGAGTGAGGGGAAGTGGACGCTGATGGACCCAAGTACG--TGCCCGGGTCTCAGT 1491 Query 249469 GATCTAC-ACGGCGCCGACTTCGACCAAGCCTATA--AGAAATACGAATCCAACGGCATC 249525 || || | |||||| || ||||| | |||| || || ||||| | | ||| | Sbjct 1490 GA-CTGCTACGGCGAGGAGTTCGAGC--GCCTGTACGAGCGCTACGAGGCGGAGGGCCGC 1434 Query 249526 GG---CAAGACAATCAAGGCTC-GGACCCTT--TTTGCGAAGGTGGTGGAGTCCCAGATA 249579 || |||| ||| |||| | ||| | ||||||| | | ||||| ||||| Sbjct 1433 GGAGTGCAGACGATCCAGGCACAGGAGGTGTGGTTTGCGA---TTCTCGAGTCGCAGATC 1377 Query 249580 GAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACG 249638 ||||| || | |||| | || | | ||| |||||||||||| |||| ||||| Sbjct 1376 GAGACCGGCGTCCCGT-TCATCCTCTACAAGGACGCGTGCAACAGCAAGTCGAACCAGAA 1318 Query 249639 GCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATACTCGTCCAA 249698 | | || || |||||| | || || ||||| | ||| | | | ||| |||| Sbjct 1317 GAACCTCGGCACCATCAAGTGCTCGAACCTCTGCACCGAGATTGTGGAGTACACGTCGCC 1258 Query 249699 GGAGGAGATTGCCGTCTGCAACCTGGC 249725 |||||||| || || |||||||| || Sbjct 1257 GGAGGAGACCGCGGTGTGCAACCTCGC 1231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073628011979712