Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11] 10,059 sequences; 49,951,730 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq6969 100 3e-16 seq6968 100 3e-16 seq6967 100 3e-16 seq9923 89.7 5e-13 seq5564 84.2 2e-11 >seq6969 Length=25347 Score = 100 bits (110), Expect = 3e-16 Identities = 284/433 (66%), Gaps = 5/433 (1%) Strand=Plus/Minus Query 153957 ACGCGACGCATAAATATATCGGGAACCCATAGGGCGTTCATCAGGTCGCGCGCTTTCGTG 154016 ||||| ||| || | ||||| | ||| || |||| | ||||||||||| | | Sbjct 10653 ACGCGCTTCATGAACAGGTCGGGGATCCACAGCGCGTAGAAGAGGTCGCGCGCACGCTGG 10594 Query 154017 TCTTCGCTGCCAATGTTTCGACGCATGTGTAAGACGTCCATTATGTCGCAATGCCACGGT 154076 || || |||| |||| || || | | || | | | |||||| |||||||| Sbjct 10593 TCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAGGAAGCCGAAGATGTCGGCGTGCCACGGC 10534 Query 154077 TCCACGTAAACTGCTTGAGCGCCTTTACGCTT---GCCGCCCTGATTTACGTGACGCACC 154133 || | ||||| || ||||| || ||||| ||||||||| | |||| || || Sbjct 10533 TCGAGGTAAATGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCC 10474 Query 154134 ATATTGTTGAAAACCCGAAGCATGGGTAGCAGACCGCTGGCGGTACCGTTTGTAGATTTA 154193 | |||||||| || || ||||| || | ||| ||| | | || ||||| || Sbjct 10473 GTGTTGTTGAACACGCGCAGCATCGGCACCAGGCCGTTCGACGTGCCGTTCGTGCCAGCG 10414 Query 154194 ATCTTGCTGTTGCGGCCTCGAACGCTGTTTACGTTTAATCCAATACCGCCGCCGTGTTTG 154253 || | |||| | | || | | ||| |||| | || || |||||| | ||| Sbjct 10413 ATGTAGCTGCCGGCGGAGCGGATGTTGTGCACGTGCAGGCCGATGCCGCCGGCCGCCTTG 10354 Query 154254 GAGATCATGGCGCAATCGTTCAATGTGTTATAGATACCACGAATGCTATCG-CTTTCCAT 154312 ||| | |||||| || |||| |||| ||||| || |||||| ||| | ||| | Sbjct 10353 CTGATGACGGCGCACTCCTTCAGCGTGTCGTAGATCCCGTCAATGCTGTCGTCCTTCGAC 10294 Query 154313 GGTCAATAGGAAACATGAACTCATCTGCGGAGTTGGAGTGCCGGCAGCAAACATGGTCGG 154372 | | ||||| || || ||||||||||| | || |||||||| || | |||||| Sbjct 10293 GCG-ACGAGGAAGCACGAGCTCATCTGCGGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGG 10235 Query 154373 GCTTGCGTGCGTG 154385 | | ||||||||| Sbjct 10234 GGTGGCGTGCGTG 10222 >seq6968 Length=12362 Score = 100 bits (110), Expect = 3e-16 Identities = 284/433 (66%), Gaps = 5/433 (1%) Strand=Plus/Minus Query 153957 ACGCGACGCATAAATATATCGGGAACCCATAGGGCGTTCATCAGGTCGCGCGCTTTCGTG 154016 ||||| ||| || | ||||| | ||| || |||| | ||||||||||| | | Sbjct 10653 ACGCGCTTCATGAACAGGTCGGGGATCCACAGCGCGTAGAAGAGGTCGCGCGCACGCTGG 10594 Query 154017 TCTTCGCTGCCAATGTTTCGACGCATGTGTAAGACGTCCATTATGTCGCAATGCCACGGT 154076 || || |||| |||| || || | | || | | | |||||| |||||||| Sbjct 10593 TCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAGGAAGCCGAAGATGTCGGCGTGCCACGGC 10534 Query 154077 TCCACGTAAACTGCTTGAGCGCCTTTACGCTT---GCCGCCCTGATTTACGTGACGCACC 154133 || | ||||| || ||||| || ||||| ||||||||| | |||| || || Sbjct 10533 TCGAGGTAAATGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCC 10474 Query 154134 ATATTGTTGAAAACCCGAAGCATGGGTAGCAGACCGCTGGCGGTACCGTTTGTAGATTTA 154193 | |||||||| || || ||||| || | ||| ||| | | || ||||| || Sbjct 10473 GTGTTGTTGAACACGCGCAGCATCGGCACCAGGCCGTTCGACGTGCCGTTCGTGCCAGCG 10414 Query 154194 ATCTTGCTGTTGCGGCCTCGAACGCTGTTTACGTTTAATCCAATACCGCCGCCGTGTTTG 154253 || | |||| | | || | | ||| |||| | || || |||||| | ||| Sbjct 10413 ATGTAGCTGCCGGCGGAGCGGATGTTGTGCACGTGCAGGCCGATGCCGCCGGCCGCCTTG 10354 Query 154254 GAGATCATGGCGCAATCGTTCAATGTGTTATAGATACCACGAATGCTATCG-CTTTCCAT 154312 ||| | |||||| || |||| |||| ||||| || |||||| ||| | ||| | Sbjct 10353 CTGATGACGGCGCACTCCTTCAGCGTGTCGTAGATCCCGTCAATGCTGTCGTCCTTCGAC 10294 Query 154313 GGTCAATAGGAAACATGAACTCATCTGCGGAGTTGGAGTGCCGGCAGCAAACATGGTCGG 154372 | | ||||| || || ||||||||||| | || |||||||| || | |||||| Sbjct 10293 GCG-ACGAGGAAGCACGAGCTCATCTGCGGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGG 10235 Query 154373 GCTTGCGTGCGTG 154385 | | ||||||||| Sbjct 10234 GGTGGCGTGCGTG 10222 >seq6967 Length=22635 Score = 100 bits (110), Expect = 3e-16 Identities = 284/433 (66%), Gaps = 5/433 (1%) Strand=Plus/Plus Query 153957 ACGCGACGCATAAATATATCGGGAACCCATAGGGCGTTCATCAGGTCGCGCGCTTTCGTG 154016 ||||| ||| || | ||||| | ||| || |||| | ||||||||||| | | Sbjct 1546 ACGCGCTTCATGAACAGGTCGGGGATCCACAGCGCGTAGAAGAGGTCGCGCGCACGCTGG 1605 Query 154017 TCTTCGCTGCCAATGTTTCGACGCATGTGTAAGACGTCCATTATGTCGCAATGCCACGGT 154076 || || |||| |||| || || | | || | | | |||||| |||||||| Sbjct 1606 TCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAGGAAGCCGAAGATGTCGGCGTGCCACGGC 1665 Query 154077 TCCACGTAAACTGCTTGAGCGCCTTTACGCTT---GCCGCCCTGATTTACGTGACGCACC 154133 || | ||||| || ||||| || ||||| ||||||||| | |||| || || Sbjct 1666 TCGAGGTAAATGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCC 1725 Query 154134 ATATTGTTGAAAACCCGAAGCATGGGTAGCAGACCGCTGGCGGTACCGTTTGTAGATTTA 154193 | |||||||| || || ||||| || | ||| ||| | | || ||||| || Sbjct 1726 GTGTTGTTGAACACGCGCAGCATCGGCACCAGGCCGTTCGACGTGCCGTTCGTGCCAGCG 1785 Query 154194 ATCTTGCTGTTGCGGCCTCGAACGCTGTTTACGTTTAATCCAATACCGCCGCCGTGTTTG 154253 || | |||| | | || | | ||| |||| | || || |||||| | ||| Sbjct 1786 ATGTAGCTGCCGGCGGAGCGGATGTTGTGCACGTGCAGGCCGATGCCGCCGGCCGCCTTG 1845 Query 154254 GAGATCATGGCGCAATCGTTCAATGTGTTATAGATACCACGAATGCTATCG-CTTTCCAT 154312 ||| | |||||| || |||| |||| ||||| || |||||| ||| | ||| | Sbjct 1846 CTGATGACGGCGCACTCCTTCAGCGTGTCGTAGATCCCGTCAATGCTGTCGTCCTTCGAC 1905 Query 154313 GGTCAATAGGAAACATGAACTCATCTGCGGAGTTGGAGTGCCGGCAGCAAACATGGTCGG 154372 | | ||||| || || ||||||||||| | || |||||||| || | |||||| Sbjct 1906 GCG-ACGAGGAAGCACGAGCTCATCTGCGGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGG 1964 Query 154373 GCTTGCGTGCGTG 154385 | | ||||||||| Sbjct 1965 GGTGGCGTGCGTG 1977 >seq9923 Length=5125 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | |||| || | ||| | ||| ||||| || || ||||| || || Sbjct 1216 TGGCCACCGCGCAGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCC 1275 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | |||| || || ||||| || |||||| ||||||| || ||||| || || Sbjct 1276 GCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGC 1335 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTC 139713 || ||||| || ||||| ||| | || | || | | || | |||||| ||| ||| Sbjct 1336 GGGATGCCCTCCTTGTCC-TGAATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTC 1394 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | | | ||||||||||||| ||| || ||||| || ||||| Sbjct 1395 GACCTCCAGCGCAATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1445 >seq5564 Length=1640 Score = 84.2 bits (92), Expect = 2e-11 Identities = 125/172 (73%), Gaps = 8/172 (5%) Strand=Plus/Plus Query 52894 GGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATG 52953 |||||||||||| |||||| ||||||||||||| ||||||||| | ||| || || Sbjct 31 GGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTTGCGGACCGGCTGCTGGTG 90 Query 52954 CAGCTCGGTCAGCCGAAATACTATAATGCG-CGTAACCCCTTTTCG--TTTATGAACAAC 53010 ||| || | | ||| |||| || | | || | ||| |||| || ||| | | Sbjct 91 TCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCC---TTCGACTTCATGGAGATG 147 Query 53011 ATATCGCTCGAGGGCAAAACAAACTTTTTCGAG-AGACGTGTGGGCGAGTAC 53061 || ||||| ||||||| || ||||| |||||| ||| | || ||||||||| Sbjct 148 ATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAG-GTTGGCGAGTAC 198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496001626152800