Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11]
10,059 sequences; 49,951,730 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq6969 113 7e-20
seq6968 113 7e-20
seq6967 113 7e-20
>seq6969
Length=25347
Score = 113 bits (124), Expect = 7e-20
Identities = 358/546 (66%), Gaps = 12/546 (2%)
Strand=Plus/Plus
Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866
|| ||||||| | | ||||| ||||| ||||| | ||| ||| | | | ||
Sbjct 10421 ACGAACGGCACGTCGAACGGCCTGGTGCCGATGCTGCGCGTGTTCAACAACACGGCCCGC 10480
Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926
||||| ||||||||| ||| || ||||| | ||| | ||| | || || |||
Sbjct 10481 TACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCATTTACCTCGAGCCGTGG 10540
Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATG---CGCAAAAACTCTGGCTTTGAAGAGGCA 96983
||||| ||| | || | ||| | | || ||||| | | ||| || ||
Sbjct 10541 CACGCCGACATCTTCGGCTTCCTGCTGCTGAAGCGCAACACC---GGCAAGGACGACCAG 10597
Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043
|| || | ||| | || || || || ||| | || || |||||||||||||||| ||
Sbjct 10598 CGTGCGCGCGACCTCTTCTACGCGCTGTGGATCCCCGACCTGTTCATGAAGCGCGTGAAG 10657
Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACT-CGTCACCCGGTCTGTCCGATTGCTG 97102
| || | |||| || ||| | ||| | | ||| || ||||| || ||||
Sbjct 10658 AGTGAGGGGAAGTGGACGCTGATG-GACCCAAGTACGTGCCCGGGTCTCAGTGACTGCTA 10716
Query 97103 GGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTG-AGAC 97161
||||| ||||| ||| | |||| | ||||||| |||||||| ||| ||||
Sbjct 10717 CGGCGAGGAGTTCGAGCGCCTGTACGAGCGCTACGAGGCGGAGGGCCGCGGAGTGCAGAC 10776
Query 97162 GAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221
|| || | |||| || ||||| || || | | | ||| | ||||| || |
Sbjct 10777 GA-TCCAGGCACAGGAGGTGTGGTTTGCGATTCTCGAGTCGCAGATCGAGACCGGCGTCC 10835
Query 97222 CGTACATTCTCTACAAGGATACCGTGAATC-GCAACAGCAACCAACGCCACTTGGGCACC 97280
||| ||| ||||||||||| | ||| | | |||| ||||| || | ||||||
Sbjct 10836 CGTTCATCCTCTACAAGGACGC-GTGCAACAGCAAGTCGAACCAGAAGAACCTCGGCACC 10894
Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCA 97340
|||||| |||| || || ||||| || ||||| |||||| | || ||||| ||||| ||
Sbjct 10895 ATCAAGTGCTCGAACCTCTGCACCGAGATTGTGGAGTACACGTCGCCGGAGGAGACCGCG 10954
Query 97341 GTTTGC 97346
|| |||
Sbjct 10955 GTGTGC 10960
Score = 87.8 bits (96), Expect = 3e-12
Identities = 218/323 (67%), Gaps = 6/323 (2%)
Strand=Plus/Plus
Query 97950 CTGTGGAACGATGAC-ATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACAT 98008
|||||||| || ||| ||| | | |||||| | | |||| || ||| | | | |||
Sbjct 11585 CTGTGGAATGA-GACGATGCGCAACGAGATCATCTCCTACAACGGCTCCGTGCTGACCAT 11643
Query 98009 TACCATCATCCCGGAAGAGTTGC-GCAGAATCTACAAGACTGTCTGGGAGATTCCGACCA 98067
|| ||||||||| || || | || | ||| || || |||||||| |||
Sbjct 11644 CGACAGCATCCCGGACGACCTGAAGGAGC-TGTACCGCACGGTGTGGGAGATCCCGCAGC 11702
Query 98068 AGACGCTGATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCA 98127
| ||||||||| ||||| |||| | || ||||| |||||| || ||| | |
Sbjct 11703 GCAAGCTGATCGACATGGCCCGCGACCGCGGCCAGTACATCGACCAGTCCCAGTCGCTGA 11762
Query 98128 ATCTGTACGTTGCCGAGCCC-ACCTACAGTCGTATGACTTCGATACACTTTTACGCATGG 98186
| || | | | || |||||| |||| | | || || ||||| | ||| ||| | |||
Sbjct 11763 ACCTCTTCCT-GCAGAGCCCCACCTCGGGCCAGATCACGTCGATGCTCTTCTACACGTGG 11821
Query 98187 AACAAGGGCCTCAAGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATA 98246
| ||| || |||||||| ||||||| ||| | || ||| ||||| || |||| ||
Sbjct 11822 GAGTCGGGTCTGAAGACGGGTGTGTACTACCTGCGCACGAAGGCGGCCGCCGATGCGATT 11881
Query 98247 CCATTTACGGTGGACGTGAATCG 98269
||||||||||| | ||| ||
Sbjct 11882 AAGTTTACGGTGGATGCGAAGCG 11904
>seq6968
Length=12362
Score = 113 bits (124), Expect = 7e-20
Identities = 358/546 (66%), Gaps = 12/546 (2%)
Strand=Plus/Plus
Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866
|| ||||||| | | ||||| ||||| ||||| | ||| ||| | | | ||
Sbjct 10421 ACGAACGGCACGTCGAACGGCCTGGTGCCGATGCTGCGCGTGTTCAACAACACGGCCCGC 10480
Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926
||||| ||||||||| ||| || ||||| | ||| | ||| | || || |||
Sbjct 10481 TACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCATTTACCTCGAGCCGTGG 10540
Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATG---CGCAAAAACTCTGGCTTTGAAGAGGCA 96983
||||| ||| | || | ||| | | || ||||| | | ||| || ||
Sbjct 10541 CACGCCGACATCTTCGGCTTCCTGCTGCTGAAGCGCAACACC---GGCAAGGACGACCAG 10597
Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043
|| || | ||| | || || || || ||| | || || |||||||||||||||| ||
Sbjct 10598 CGTGCGCGCGACCTCTTCTACGCGCTGTGGATCCCCGACCTGTTCATGAAGCGCGTGAAG 10657
Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACT-CGTCACCCGGTCTGTCCGATTGCTG 97102
| || | |||| || ||| | ||| | | ||| || ||||| || ||||
Sbjct 10658 AGTGAGGGGAAGTGGACGCTGATG-GACCCAAGTACGTGCCCGGGTCTCAGTGACTGCTA 10716
Query 97103 GGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTG-AGAC 97161
||||| ||||| ||| | |||| | ||||||| |||||||| ||| ||||
Sbjct 10717 CGGCGAGGAGTTCGAGCGCCTGTACGAGCGCTACGAGGCGGAGGGCCGCGGAGTGCAGAC 10776
Query 97162 GAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221
|| || | |||| || ||||| || || | | | ||| | ||||| || |
Sbjct 10777 GA-TCCAGGCACAGGAGGTGTGGTTTGCGATTCTCGAGTCGCAGATCGAGACCGGCGTCC 10835
Query 97222 CGTACATTCTCTACAAGGATACCGTGAATC-GCAACAGCAACCAACGCCACTTGGGCACC 97280
||| ||| ||||||||||| | ||| | | |||| ||||| || | ||||||
Sbjct 10836 CGTTCATCCTCTACAAGGACGC-GTGCAACAGCAAGTCGAACCAGAAGAACCTCGGCACC 10894
Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCA 97340
|||||| |||| || || ||||| || ||||| |||||| | || ||||| ||||| ||
Sbjct 10895 ATCAAGTGCTCGAACCTCTGCACCGAGATTGTGGAGTACACGTCGCCGGAGGAGACCGCG 10954
Query 97341 GTTTGC 97346
|| |||
Sbjct 10955 GTGTGC 10960
Score = 87.8 bits (96), Expect = 3e-12
Identities = 218/323 (67%), Gaps = 6/323 (2%)
Strand=Plus/Plus
Query 97950 CTGTGGAACGATGAC-ATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACAT 98008
|||||||| || ||| ||| | | |||||| | | |||| || ||| | | | |||
Sbjct 11585 CTGTGGAATGA-GACGATGCGCAACGAGATCATCTCCTACAACGGCTCCGTGCTGACCAT 11643
Query 98009 TACCATCATCCCGGAAGAGTTGC-GCAGAATCTACAAGACTGTCTGGGAGATTCCGACCA 98067
|| ||||||||| || || | || | ||| || || |||||||| |||
Sbjct 11644 CGACAGCATCCCGGACGACCTGAAGGAGC-TGTACCGCACGGTGTGGGAGATCCCGCAGC 11702
Query 98068 AGACGCTGATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCA 98127
| ||||||||| ||||| |||| | || ||||| |||||| || ||| | |
Sbjct 11703 GCAAGCTGATCGACATGGCCCGCGACCGCGGCCAGTACATCGACCAGTCCCAGTCGCTGA 11762
Query 98128 ATCTGTACGTTGCCGAGCCC-ACCTACAGTCGTATGACTTCGATACACTTTTACGCATGG 98186
| || | | | || |||||| |||| | | || || ||||| | ||| ||| | |||
Sbjct 11763 ACCTCTTCCT-GCAGAGCCCCACCTCGGGCCAGATCACGTCGATGCTCTTCTACACGTGG 11821
Query 98187 AACAAGGGCCTCAAGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATA 98246
| ||| || |||||||| ||||||| ||| | || ||| ||||| || |||| ||
Sbjct 11822 GAGTCGGGTCTGAAGACGGGTGTGTACTACCTGCGCACGAAGGCGGCCGCCGATGCGATT 11881
Query 98247 CCATTTACGGTGGACGTGAATCG 98269
||||||||||| | ||| ||
Sbjct 11882 AAGTTTACGGTGGATGCGAAGCG 11904
>seq6967
Length=22635
Score = 113 bits (124), Expect = 7e-20
Identities = 358/546 (66%), Gaps = 12/546 (2%)
Strand=Plus/Minus
Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866
|| ||||||| | | ||||| ||||| ||||| | ||| ||| | | | ||
Sbjct 1778 ACGAACGGCACGTCGAACGGCCTGGTGCCGATGCTGCGCGTGTTCAACAACACGGCCCGC 1719
Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926
||||| ||||||||| ||| || ||||| | ||| | ||| | || || |||
Sbjct 1718 TACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCATTTACCTCGAGCCGTGG 1659
Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATG---CGCAAAAACTCTGGCTTTGAAGAGGCA 96983
||||| ||| | || | ||| | | || ||||| | | ||| || ||
Sbjct 1658 CACGCCGACATCTTCGGCTTCCTGCTGCTGAAGCGCAACACC---GGCAAGGACGACCAG 1602
Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043
|| || | ||| | || || || || ||| | || || |||||||||||||||| ||
Sbjct 1601 CGTGCGCGCGACCTCTTCTACGCGCTGTGGATCCCCGACCTGTTCATGAAGCGCGTGAAG 1542
Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACT-CGTCACCCGGTCTGTCCGATTGCTG 97102
| || | |||| || ||| | ||| | | ||| || ||||| || ||||
Sbjct 1541 AGTGAGGGGAAGTGGACGCTGATG-GACCCAAGTACGTGCCCGGGTCTCAGTGACTGCTA 1483
Query 97103 GGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTG-AGAC 97161
||||| ||||| ||| | |||| | ||||||| |||||||| ||| ||||
Sbjct 1482 CGGCGAGGAGTTCGAGCGCCTGTACGAGCGCTACGAGGCGGAGGGCCGCGGAGTGCAGAC 1423
Query 97162 GAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221
|| || | |||| || ||||| || || | | | ||| | ||||| || |
Sbjct 1422 GA-TCCAGGCACAGGAGGTGTGGTTTGCGATTCTCGAGTCGCAGATCGAGACCGGCGTCC 1364
Query 97222 CGTACATTCTCTACAAGGATACCGTGAATC-GCAACAGCAACCAACGCCACTTGGGCACC 97280
||| ||| ||||||||||| | ||| | | |||| ||||| || | ||||||
Sbjct 1363 CGTTCATCCTCTACAAGGACGC-GTGCAACAGCAAGTCGAACCAGAAGAACCTCGGCACC 1305
Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCA 97340
|||||| |||| || || ||||| || ||||| |||||| | || ||||| ||||| ||
Sbjct 1304 ATCAAGTGCTCGAACCTCTGCACCGAGATTGTGGAGTACACGTCGCCGGAGGAGACCGCG 1245
Query 97341 GTTTGC 97346
|| |||
Sbjct 1244 GTGTGC 1239
Score = 87.8 bits (96), Expect = 3e-12
Identities = 218/323 (67%), Gaps = 6/323 (2%)
Strand=Plus/Minus
Query 97950 CTGTGGAACGATGAC-ATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACAT 98008
|||||||| || ||| ||| | | |||||| | | |||| || ||| | | | |||
Sbjct 614 CTGTGGAATGA-GACGATGCGCAACGAGATCATCTCCTACAACGGCTCCGTGCTGACCAT 556
Query 98009 TACCATCATCCCGGAAGAGTTGC-GCAGAATCTACAAGACTGTCTGGGAGATTCCGACCA 98067
|| ||||||||| || || | || | ||| || || |||||||| |||
Sbjct 555 CGACAGCATCCCGGACGACCTGAAGGAGC-TGTACCGCACGGTGTGGGAGATCCCGCAGC 497
Query 98068 AGACGCTGATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCA 98127
| ||||||||| ||||| |||| | || ||||| |||||| || ||| | |
Sbjct 496 GCAAGCTGATCGACATGGCCCGCGACCGCGGCCAGTACATCGACCAGTCCCAGTCGCTGA 437
Query 98128 ATCTGTACGTTGCCGAGCCC-ACCTACAGTCGTATGACTTCGATACACTTTTACGCATGG 98186
| || | | | || |||||| |||| | | || || ||||| | ||| ||| | |||
Sbjct 436 ACCTCTTCCT-GCAGAGCCCCACCTCGGGCCAGATCACGTCGATGCTCTTCTACACGTGG 378
Query 98187 AACAAGGGCCTCAAGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATA 98246
| ||| || |||||||| ||||||| ||| | || ||| ||||| || |||| ||
Sbjct 377 GAGTCGGGTCTGAAGACGGGTGTGTACTACCTGCGCACGAAGGCGGCCGCCGATGCGATT 318
Query 98247 CCATTTACGGTGGACGTGAATCG 98269
||||||||||| | ||| ||
Sbjct 317 AAGTTTACGGTGGATGCGAAGCG 295
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740966021068840
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