Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11] 10,059 sequences; 49,951,730 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq8929 98.7 1e-15 seq8928 98.7 1e-15 seq8927 98.7 1e-15 seq8644 82.4 9e-11 seq2805 82.4 9e-11 >seq8929 Length=9316 Score = 98.7 bits (108), Expect = 1e-15 Identities = 168/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 15362 TATTCGGGCTTTACCGGCGAAAGGATCCAAAGCACCATATTTATGGGACCGACGTACTAT 15421 || || ||| | |||||||| ||| || || | | || | || || | ||||| Sbjct 1183 TACTCCGGCATCACCGGCGAGCTGATGCAGGGCTACGTCTTCTTTGGCCCCATCTACTAC 1124 Query 15422 CACCGACTCAAACACATGGTAAAGGACAAGATGCACGCGCGATCGCACGGACAGGTGACG 15481 || || || || |||||||| | ||||||||||||||||||||| ||| | | || Sbjct 1123 CAGCGTCTGAAGCACATGGTGACGGACAAGATGCACGCGCGATCTACCGGGCCACGGTCG 1064 Query 15482 ACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAAGGCGGTGGCCTCCGCTTTGGAGAG 15541 | ||| || ||||||| | || || |||| |||||||||| ||| |||| ||| Sbjct 1063 ATGCTGACGCGGCAGCCCACCGAGGGCCGCTCGCGCAGCGGTGGCCTTCGCGTTGGTGAG 1004 Query 15542 ATGGAAAAGGACTGCATTCTGGTGCACGGCGCCACCCAATTCCTCAACGAGCGCATGTTT 15601 ||||| || ||||| ||| ||||||| | | | || ||||||||| || || Sbjct 1003 ATGGAGCGCGATTGCATGGTGGGCTACGGCGCATCGAACCTGCTAAACGAGCGCTTGCTT 944 Query 15602 CTCA 15605 ||| Sbjct 943 ATCA 940 >seq8928 Length=9347 Score = 98.7 bits (108), Expect = 1e-15 Identities = 168/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 15362 TATTCGGGCTTTACCGGCGAAAGGATCCAAAGCACCATATTTATGGGACCGACGTACTAT 15421 || || ||| | |||||||| ||| || || | | || | || || | ||||| Sbjct 1183 TACTCCGGCATCACCGGCGAGCTGATGCAGGGCTACGTCTTCTTTGGCCCCATCTACTAC 1124 Query 15422 CACCGACTCAAACACATGGTAAAGGACAAGATGCACGCGCGATCGCACGGACAGGTGACG 15481 || || || || |||||||| | ||||||||||||||||||||| ||| | | || Sbjct 1123 CAGCGTCTGAAGCACATGGTGACGGACAAGATGCACGCGCGATCTACCGGGCCACGGTCG 1064 Query 15482 ACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAAGGCGGTGGCCTCCGCTTTGGAGAG 15541 | ||| || ||||||| | || || |||| |||||||||| ||| |||| ||| Sbjct 1063 ATGCTGACGCGGCAGCCCACCGAGGGCCGCTCGCGCAGCGGTGGCCTTCGCGTTGGTGAG 1004 Query 15542 ATGGAAAAGGACTGCATTCTGGTGCACGGCGCCACCCAATTCCTCAACGAGCGCATGTTT 15601 ||||| || ||||| ||| ||||||| | | | || ||||||||| || || Sbjct 1003 ATGGAGCGCGATTGCATGGTGGGCTACGGCGCATCGAACCTGCTAAACGAGCGCTTGCTT 944 Query 15602 CTCA 15605 ||| Sbjct 943 ATCA 940 >seq8927 Length=8522 Score = 98.7 bits (108), Expect = 1e-15 Identities = 168/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 15362 TATTCGGGCTTTACCGGCGAAAGGATCCAAAGCACCATATTTATGGGACCGACGTACTAT 15421 || || ||| | |||||||| ||| || || | | || | || || | ||||| Sbjct 7235 TACTCCGGCATCACCGGCGAGCTGATGCAGGGCTACGTCTTCTTTGGCCCCATCTACTAC 7294 Query 15422 CACCGACTCAAACACATGGTAAAGGACAAGATGCACGCGCGATCGCACGGACAGGTGACG 15481 || || || || |||||||| | ||||||||||||||||||||| ||| | | || Sbjct 7295 CAGCGTCTGAAGCACATGGTGACGGACAAGATGCACGCGCGATCTACCGGGCCACGGTCG 7354 Query 15482 ACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAAGGCGGTGGCCTCCGCTTTGGAGAG 15541 | ||| || ||||||| | || || |||| |||||||||| ||| |||| ||| Sbjct 7355 ATGCTGACGCGGCAGCCCACCGAGGGCCGCTCGCGCAGCGGTGGCCTTCGCGTTGGTGAG 7414 Query 15542 ATGGAAAAGGACTGCATTCTGGTGCACGGCGCCACCCAATTCCTCAACGAGCGCATGTTT 15601 ||||| || ||||| ||| ||||||| | | | || ||||||||| || || Sbjct 7415 ATGGAGCGCGATTGCATGGTGGGCTACGGCGCATCGAACCTGCTAAACGAGCGCTTGCTT 7474 Query 15602 CTCA 15605 ||| Sbjct 7475 ATCA 7478 >seq8644 Length=13955 Score = 82.4 bits (90), Expect = 9e-11 Identities = 124/174 (71%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 126208 TCCTTGCCTCCCTCCAACCGCGTGCCAAACTGACCGTCCGGCTCCAACAACTGCACATTG 126267 ||||| || |||| || |||||| ||||||||||||||| || | | | ||| Sbjct 2916 TCCTTTCCGCCCTGCAGCCGCGTACCAAACTGACCGTCCTTGCGCAGGAGAGGGATGTTG 2857 Query 126268 TTGGCTCCCACAAAGTCCTGCGCAAACTTGACAATGGTCTCGCAC-AGGTTCTGCTCGCC 126326 ||| || |||||||| || || | ||||| |||| |||| || ||||||||| Sbjct 2856 TTGCTGCCGACAAAGTCTTGTGCCATGCCCACAATCGTCT-GCACCAGCGACTGCTCGCC 2798 Query 126327 GTGCTTGTAGTCGGTCTGCTCGGCCACGTAGCCGCTCAGCTGCGCAACCTTGAT 126380 ||| | |||| ||| ||||| | ||||| ||| |||||| | |||||||| Sbjct 2797 GTGGTGGTAGGCGGAGTGCTCCGAGACGTAACCGGACAGCTGGACTACCTTGAT 2744 >seq2805 Length=13962 Score = 82.4 bits (90), Expect = 9e-11 Identities = 124/174 (71%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 126208 TCCTTGCCTCCCTCCAACCGCGTGCCAAACTGACCGTCCGGCTCCAACAACTGCACATTG 126267 ||||| || |||| || |||||| ||||||||||||||| || | | | ||| Sbjct 11047 TCCTTTCCGCCCTGCAGCCGCGTACCAAACTGACCGTCCTTGCGCAGGAGAGGGATGTTG 11106 Query 126268 TTGGCTCCCACAAAGTCCTGCGCAAACTTGACAATGGTCTCGCAC-AGGTTCTGCTCGCC 126326 ||| || |||||||| || || | ||||| |||| |||| || ||||||||| Sbjct 11107 TTGCTGCCGACAAAGTCTTGTGCCATGCCCACAATCGTCT-GCACCAGCGACTGCTCGCC 11165 Query 126327 GTGCTTGTAGTCGGTCTGCTCGGCCACGTAGCCGCTCAGCTGCGCAACCTTGAT 126380 ||| | |||| ||| ||||| | ||||| ||| |||||| | |||||||| Sbjct 11166 GTGGTGGTAGGCGGAGTGCTCCGAGACGTAACCGGACAGCTGGACTACCTTGAT 11219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611315125098400