Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11] 10,059 sequences; 49,951,730 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq6969 114 1e-20 seq6968 114 1e-20 seq6967 114 1e-20 seq9960 89.7 4e-13 >seq6969 Length=25347 Score = 114 bits (126), Expect = 1e-20 Identities = 223/324 (69%), Gaps = 13/324 (4%) Strand=Plus/Minus Query 129990 CATCAAACTCCACATTCCATC-CGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACA 130048 ||||| ||||| | || || | |||| || || ||||| |||| ||||| | ||||| Sbjct 10681 CATCAGCGTCCACTTCCCCTCACTCTTC-ACGCGCTTCATGAACAGGTCGGGGATCCACA 10623 Query 130049 GGGCGTACAACAAATCTCGCGC----TTTTCTATCCTCGGCACCCATGTTACGTTTCAGT 130104 | ||||| || | || ||||| | || |||| | || |||| || ||||| Sbjct 10622 GCGCGTAGAAGAGGTCGCGCGCACGCTGGTCG-TCCTTG---CCGGTGTTGCGCTTCAGC 10567 Query 130105 TCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTC 130164 ||||| || | ||||||||||||||||| || | ||||| || | |||||||| Sbjct 10566 AGCAGGAAGCCGAAGATGTCGGCGTGCCACGGCTCGAGGTAAATGGCGAAGGCGCCCTTG 10507 Query 130165 CGTTT---GCCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCC 130221 || || ||| || ||||| |||| ||| | | |||||| | || |||| ||| | | Sbjct 10506 CGCTTACCGCCGCCCTGGTCCACGTAGCGGGCCGTGTTGTTGAACACGCGCAGCATCGGC 10447 Query 130222 TCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTA 130281 ||| ||||| | ||||||||| |||| | ||| | ||||| | || | ||| Sbjct 10446 ACCAGGCCGTTCGACGTGCCGTTCGTGCCAGCGATGTAGCTGCCGGCGGAGCGGATGTTG 10387 Query 130282 TGAACGCTTAGACCTATGCCGCCG 130305 || ||| || || ||||||||| Sbjct 10386 TGCACGTGCAGGCCGATGCCGCCG 10363 >seq6968 Length=12362 Score = 114 bits (126), Expect = 1e-20 Identities = 223/324 (69%), Gaps = 13/324 (4%) Strand=Plus/Minus Query 129990 CATCAAACTCCACATTCCATC-CGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACA 130048 ||||| ||||| | || || | |||| || || ||||| |||| ||||| | ||||| Sbjct 10681 CATCAGCGTCCACTTCCCCTCACTCTTC-ACGCGCTTCATGAACAGGTCGGGGATCCACA 10623 Query 130049 GGGCGTACAACAAATCTCGCGC----TTTTCTATCCTCGGCACCCATGTTACGTTTCAGT 130104 | ||||| || | || ||||| | || |||| | || |||| || ||||| Sbjct 10622 GCGCGTAGAAGAGGTCGCGCGCACGCTGGTCG-TCCTTG---CCGGTGTTGCGCTTCAGC 10567 Query 130105 TCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTC 130164 ||||| || | ||||||||||||||||| || | ||||| || | |||||||| Sbjct 10566 AGCAGGAAGCCGAAGATGTCGGCGTGCCACGGCTCGAGGTAAATGGCGAAGGCGCCCTTG 10507 Query 130165 CGTTT---GCCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCC 130221 || || ||| || ||||| |||| ||| | | |||||| | || |||| ||| | | Sbjct 10506 CGCTTACCGCCGCCCTGGTCCACGTAGCGGGCCGTGTTGTTGAACACGCGCAGCATCGGC 10447 Query 130222 TCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTA 130281 ||| ||||| | ||||||||| |||| | ||| | ||||| | || | ||| Sbjct 10446 ACCAGGCCGTTCGACGTGCCGTTCGTGCCAGCGATGTAGCTGCCGGCGGAGCGGATGTTG 10387 Query 130282 TGAACGCTTAGACCTATGCCGCCG 130305 || ||| || || ||||||||| Sbjct 10386 TGCACGTGCAGGCCGATGCCGCCG 10363 >seq6967 Length=22635 Score = 114 bits (126), Expect = 1e-20 Identities = 223/324 (69%), Gaps = 13/324 (4%) Strand=Plus/Plus Query 129990 CATCAAACTCCACATTCCATC-CGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACA 130048 ||||| ||||| | || || | |||| || || ||||| |||| ||||| | ||||| Sbjct 1518 CATCAGCGTCCACTTCCCCTCACTCTTC-ACGCGCTTCATGAACAGGTCGGGGATCCACA 1576 Query 130049 GGGCGTACAACAAATCTCGCGC----TTTTCTATCCTCGGCACCCATGTTACGTTTCAGT 130104 | ||||| || | || ||||| | || |||| | || |||| || ||||| Sbjct 1577 GCGCGTAGAAGAGGTCGCGCGCACGCTGGTCG-TCCTTG---CCGGTGTTGCGCTTCAGC 1632 Query 130105 TCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTC 130164 ||||| || | ||||||||||||||||| || | ||||| || | |||||||| Sbjct 1633 AGCAGGAAGCCGAAGATGTCGGCGTGCCACGGCTCGAGGTAAATGGCGAAGGCGCCCTTG 1692 Query 130165 CGTTT---GCCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCC 130221 || || ||| || ||||| |||| ||| | | |||||| | || |||| ||| | | Sbjct 1693 CGCTTACCGCCGCCCTGGTCCACGTAGCGGGCCGTGTTGTTGAACACGCGCAGCATCGGC 1752 Query 130222 TCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTA 130281 ||| ||||| | ||||||||| |||| | ||| | ||||| | || | ||| Sbjct 1753 ACCAGGCCGTTCGACGTGCCGTTCGTGCCAGCGATGTAGCTGCCGGCGGAGCGGATGTTG 1812 Query 130282 TGAACGCTTAGACCTATGCCGCCG 130305 || ||| || || ||||||||| Sbjct 1813 TGCACGTGCAGGCCGATGCCGCCG 1836 >seq9960 Length=1600 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | |||||||| ||| || | || || || || | | | Sbjct 489 ATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACGATCGCCCTCGAGGTCGAGGCGAGC 548 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || ||||||||||| ||||| || ||||| Sbjct 549 GACACCATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGATCAG 608 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | ||||| |||||| || | || |||||| Sbjct 609 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 668 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || | || |||| ||||||| || Sbjct 669 ATCCAGAAGGAGTCGACGCTGCACCTTGTGCTGCGCCTGCGCGGTGG 715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419676543839335