Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11] 10,059 sequences; 49,951,730 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq8644 129 1e-24 seq2805 129 1e-24 seq5564 89.7 1e-12 >seq8644 Length=13955 Score = 129 bits (142), Expect = 1e-24 Identities = 216/312 (69%), Gaps = 8/312 (3%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTC----GCGGTATGATGTGGAGCGTTCTAT 218573 ||||| | || |||||||| ||||| ||||| || | || ||||| || Sbjct 2609 GACTTTGTGGATAAGGAGCTGATTCTCTTCTCCATCGCAGACTGC----GAGCGCAGCAT 2664 Query 218574 TCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAA 218633 || |||| | | || ||| ||||||| |||||| ||||| |||||| || ||||| Sbjct 2665 CCCGAGCGCGATTGACGGCTTCAAGCCTGGGCAGCGCAAGATTCTCTTTTCCTGCTTCAA 2724 Query 218634 GCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 ||| ||||| || | | || ||||| | ||| | || ||||| || || || || Sbjct 2725 GCGCAACCTCGTCAACGCGATCAAGGTAGTCCAGCTGTCCGGTTACGTCTCGGAGCACTC 2784 Query 218694 TGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTA 218753 | |||||| ||||| |||||| ||| | | ||||| ||||||||||| |||| Sbjct 2785 CGCCTACCACCACGGCGAGCAGTCGCTGGTGCAGACGATTGTGGGCATGGCACAAGACTT 2844 Query 218754 TGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATT 218813 ||| ||||| |||||||| | |||| | |||||||||||||| | || || Sbjct 2845 TGTCGGCAGCAACAACATCCCTCTCCTGCGCAAGGACGGTCAGTTTGGTACGCGGCTGCA 2904 Query 218814 GGGTGGAAAGGA 218825 ||| |||||||| Sbjct 2905 GGGCGGAAAGGA 2916 >seq2805 Length=13962 Score = 129 bits (142), Expect = 1e-24 Identities = 216/312 (69%), Gaps = 8/312 (3%) Strand=Plus/Minus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTC----GCGGTATGATGTGGAGCGTTCTAT 218573 ||||| | || |||||||| ||||| ||||| || | || ||||| || Sbjct 11354 GACTTTGTGGATAAGGAGCTGATTCTCTTCTCCATCGCAGACTGC----GAGCGCAGCAT 11299 Query 218574 TCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAA 218633 || |||| | | || ||| ||||||| |||||| ||||| |||||| || ||||| Sbjct 11298 CCCGAGCGCGATTGACGGCTTCAAGCCTGGGCAGCGCAAGATTCTCTTTTCCTGCTTCAA 11239 Query 218634 GCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 ||| ||||| || | | || ||||| | ||| | || ||||| || || || || Sbjct 11238 GCGCAACCTCGTCAACGCGATCAAGGTAGTCCAGCTGTCCGGTTACGTCTCGGAGCACTC 11179 Query 218694 TGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTA 218753 | |||||| ||||| |||||| ||| | | ||||| ||||||||||| |||| Sbjct 11178 CGCCTACCACCACGGCGAGCAGTCGCTGGTGCAGACGATTGTGGGCATGGCACAAGACTT 11119 Query 218754 TGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATT 218813 ||| ||||| |||||||| | |||| | |||||||||||||| | || || Sbjct 11118 TGTCGGCAGCAACAACATCCCTCTCCTGCGCAAGGACGGTCAGTTTGGTACGCGGCTGCA 11059 Query 218814 GGGTGGAAAGGA 218825 ||| |||||||| Sbjct 11058 GGGCGGAAAGGA 11047 >seq5564 Length=1640 Score = 89.7 bits (98), Expect = 1e-12 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| | |||||||||||||||||| | || Sbjct 179 TCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAAGGGCTGCGTC 120 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| | || || | || | | ||||| || || ||||| | Sbjct 119 ACGTTGTAGTGCTTCTCCAGCCCCAGCGACACCAGCAGCCGGTCCGCAACGAACTCGATG 60 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCA 251716 ||||| |||||| || | ||||||||| |||| Sbjct 59 TACTGCGACATCAGCTCCGCGTTCATGCCGATCA 26 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027704331429619