Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11] 10,059 sequences; 49,951,730 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq6969 170 4e-37 seq6968 170 4e-37 seq6967 170 4e-37 seq9960 152 9e-32 seq5028 140 6e-28 seq5244 98.7 2e-15 seq9962 87.8 3e-12 seq9925 87.8 3e-12 seq5682 87.8 3e-12 seq752 87.8 3e-12 >seq6969 Length=25347 Score = 170 bits (188), Expect = 4e-37 Identities = 406/602 (67%), Gaps = 15/602 (2%) Strand=Plus/Minus Query 31701 CACACCGCCGTTTCGTCCGTAGAAGTGTATTCGACAATCTCGGCACAAAGATTGCTGCCC 31760 |||||||| || || |||| || ||||| || |||||||||| || || || || | Sbjct 10959 CACACCGCGGTCTCCTCCGGCGACGTGTACTCCACAATCTCGGTGCAGAGGTTCGAGCAC 10900 Query 31761 GTGATGGTGCCGGCATTGGACTGCATGTTCTTCACGTT-CACGCTGTCCTTGTTGAGCAC 31819 ||||||||||| || ||| | ||| ||| ||||| |||||||| ||| | Sbjct 10899 TTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCTGTTGCACGC-GTCCTTGTAGAGGAT 10841 Query 31820 GTAAGGCATGCCCGTCTCGATCTGCGTGATGATCATCGCATTCCAGACATCGCGCGCTTT 31879 | | || | ||| ||||||||||||| || |||||| ||| || || | || | Sbjct 10840 GAACGGGACGCCGGTCTCGATCTGCGACTCGAGAATCGCAAACCACACCTCCTGTGCCTG 10781 Query 31880 GA-CGACTTTCTTCGCACGCCCCTCGGACTCGTAGCGAAGATACAGGTCCTCGTACTCCT 31938 || || || || | || ||||| | ||||||||| |||||| |||| |||||| Sbjct 10780 GATCGTCTGCACTC-CGCGGCCCTCCGCCTCGTAGCGCTCGTACAGGCGCTCGAACTCCT 10722 Query 31939 TGCCAAAGGCATCGGTTAGACCGGGACAC-TCCTTGGGGTCGAAGAGCGACCATGCGACA 31997 ||| || || | ||||| || ||| | |||||| || | |||| ||| | Sbjct 10721 CGCCGTAGCAGTCACTGAGACCCGGGCACGTACTTGGG-TCCATCAGCGTCCACTTCCCC 10663 Query 31998 TCGGCCTCTACTCGCTTCATGAACAGGTCGTTCAGCCACATCGCGTAAAACAGATTCCTG 32057 || || || |||||||||||||||||| | ||||| |||||| || || | | Sbjct 10662 TCACTCTTCACGCGCTTCATGAACAGGTCGGGGATCCACAGCGCGTAGAAGAGGTCGCGC 10603 Query 32058 GCGCGTTGGGTCTCCTCACCCTGGTTACGTCGGAGCAGCAGGAAGTCCATGATGTCGGGG 32117 || || ||| |||| || ||| || |||||||||||| | | |||||||| | Sbjct 10602 GCACGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAGGAAGCCGAAGATGTCGGCG 10543 Query 32118 TGGTGGGGCTCGAGGTACACGGCGAAAGATCCCTTGCG---GCGACCCCCCTGGTTTGCG 32174 || ||||||||||| | |||||| | |||||||| | || ||||||| || Sbjct 10542 TGCCACGGCTCGAGGTAAATGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTCCACG 10483 Query 32175 TATGCAGATGTCGTGTCGT---ACACCTTCAGCATGGGTACGATGCCATCAGACTCGCCA 32231 || || | | ||||| || |||| |||||| || || | ||| | ||| ||| Sbjct 10482 TA-GCGG--GCCGTGTTGTTGAACACGCGCAGCATCGGCACCAGGCCGTTCGACGTGCCG 10426 Query 32232 TTGGTCCCCTGGATCTTGGAACCACGGCCGCGAATGTCGCTCAGGTGCAGGCCGATGCCG 32291 || || || ||| | | || | ||| |||| | || |||||||||||||||| Sbjct 10425 TTCGTGCCAGCGATGTAGCTGCCGGCGGAGCGGATGTTGTGCACGTGCAGGCCGATGCCG 10366 Query 32292 CC 32293 || Sbjct 10365 CC 10364 >seq6968 Length=12362 Score = 170 bits (188), Expect = 4e-37 Identities = 406/602 (67%), Gaps = 15/602 (2%) Strand=Plus/Minus Query 31701 CACACCGCCGTTTCGTCCGTAGAAGTGTATTCGACAATCTCGGCACAAAGATTGCTGCCC 31760 |||||||| || || |||| || ||||| || |||||||||| || || || || | Sbjct 10959 CACACCGCGGTCTCCTCCGGCGACGTGTACTCCACAATCTCGGTGCAGAGGTTCGAGCAC 10900 Query 31761 GTGATGGTGCCGGCATTGGACTGCATGTTCTTCACGTT-CACGCTGTCCTTGTTGAGCAC 31819 ||||||||||| || ||| | ||| ||| ||||| |||||||| ||| | Sbjct 10899 TTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCTGTTGCACGC-GTCCTTGTAGAGGAT 10841 Query 31820 GTAAGGCATGCCCGTCTCGATCTGCGTGATGATCATCGCATTCCAGACATCGCGCGCTTT 31879 | | || | ||| ||||||||||||| || |||||| ||| || || | || | Sbjct 10840 GAACGGGACGCCGGTCTCGATCTGCGACTCGAGAATCGCAAACCACACCTCCTGTGCCTG 10781 Query 31880 GA-CGACTTTCTTCGCACGCCCCTCGGACTCGTAGCGAAGATACAGGTCCTCGTACTCCT 31938 || || || || | || ||||| | ||||||||| |||||| |||| |||||| Sbjct 10780 GATCGTCTGCACTC-CGCGGCCCTCCGCCTCGTAGCGCTCGTACAGGCGCTCGAACTCCT 10722 Query 31939 TGCCAAAGGCATCGGTTAGACCGGGACAC-TCCTTGGGGTCGAAGAGCGACCATGCGACA 31997 ||| || || | ||||| || ||| | |||||| || | |||| ||| | Sbjct 10721 CGCCGTAGCAGTCACTGAGACCCGGGCACGTACTTGGG-TCCATCAGCGTCCACTTCCCC 10663 Query 31998 TCGGCCTCTACTCGCTTCATGAACAGGTCGTTCAGCCACATCGCGTAAAACAGATTCCTG 32057 || || || |||||||||||||||||| | ||||| |||||| || || | | Sbjct 10662 TCACTCTTCACGCGCTTCATGAACAGGTCGGGGATCCACAGCGCGTAGAAGAGGTCGCGC 10603 Query 32058 GCGCGTTGGGTCTCCTCACCCTGGTTACGTCGGAGCAGCAGGAAGTCCATGATGTCGGGG 32117 || || ||| |||| || ||| || |||||||||||| | | |||||||| | Sbjct 10602 GCACGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAGGAAGCCGAAGATGTCGGCG 10543 Query 32118 TGGTGGGGCTCGAGGTACACGGCGAAAGATCCCTTGCG---GCGACCCCCCTGGTTTGCG 32174 || ||||||||||| | |||||| | |||||||| | || ||||||| || Sbjct 10542 TGCCACGGCTCGAGGTAAATGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTCCACG 10483 Query 32175 TATGCAGATGTCGTGTCGT---ACACCTTCAGCATGGGTACGATGCCATCAGACTCGCCA 32231 || || | | ||||| || |||| |||||| || || | ||| | ||| ||| Sbjct 10482 TA-GCGG--GCCGTGTTGTTGAACACGCGCAGCATCGGCACCAGGCCGTTCGACGTGCCG 10426 Query 32232 TTGGTCCCCTGGATCTTGGAACCACGGCCGCGAATGTCGCTCAGGTGCAGGCCGATGCCG 32291 || || || ||| | | || | ||| |||| | || |||||||||||||||| Sbjct 10425 TTCGTGCCAGCGATGTAGCTGCCGGCGGAGCGGATGTTGTGCACGTGCAGGCCGATGCCG 10366 Query 32292 CC 32293 || Sbjct 10365 CC 10364 >seq6967 Length=22635 Score = 170 bits (188), Expect = 4e-37 Identities = 406/602 (67%), Gaps = 15/602 (2%) Strand=Plus/Plus Query 31701 CACACCGCCGTTTCGTCCGTAGAAGTGTATTCGACAATCTCGGCACAAAGATTGCTGCCC 31760 |||||||| || || |||| || ||||| || |||||||||| || || || || | Sbjct 1240 CACACCGCGGTCTCCTCCGGCGACGTGTACTCCACAATCTCGGTGCAGAGGTTCGAGCAC 1299 Query 31761 GTGATGGTGCCGGCATTGGACTGCATGTTCTTCACGTT-CACGCTGTCCTTGTTGAGCAC 31819 ||||||||||| || ||| | ||| ||| ||||| |||||||| ||| | Sbjct 1300 TTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCTGTTGCACGC-GTCCTTGTAGAGGAT 1358 Query 31820 GTAAGGCATGCCCGTCTCGATCTGCGTGATGATCATCGCATTCCAGACATCGCGCGCTTT 31879 | | || | ||| ||||||||||||| || |||||| ||| || || | || | Sbjct 1359 GAACGGGACGCCGGTCTCGATCTGCGACTCGAGAATCGCAAACCACACCTCCTGTGCCTG 1418 Query 31880 GA-CGACTTTCTTCGCACGCCCCTCGGACTCGTAGCGAAGATACAGGTCCTCGTACTCCT 31938 || || || || | || ||||| | ||||||||| |||||| |||| |||||| Sbjct 1419 GATCGTCTGCACTC-CGCGGCCCTCCGCCTCGTAGCGCTCGTACAGGCGCTCGAACTCCT 1477 Query 31939 TGCCAAAGGCATCGGTTAGACCGGGACAC-TCCTTGGGGTCGAAGAGCGACCATGCGACA 31997 ||| || || | ||||| || ||| | |||||| || | |||| ||| | Sbjct 1478 CGCCGTAGCAGTCACTGAGACCCGGGCACGTACTTGGG-TCCATCAGCGTCCACTTCCCC 1536 Query 31998 TCGGCCTCTACTCGCTTCATGAACAGGTCGTTCAGCCACATCGCGTAAAACAGATTCCTG 32057 || || || |||||||||||||||||| | ||||| |||||| || || | | Sbjct 1537 TCACTCTTCACGCGCTTCATGAACAGGTCGGGGATCCACAGCGCGTAGAAGAGGTCGCGC 1596 Query 32058 GCGCGTTGGGTCTCCTCACCCTGGTTACGTCGGAGCAGCAGGAAGTCCATGATGTCGGGG 32117 || || ||| |||| || ||| || |||||||||||| | | |||||||| | Sbjct 1597 GCACGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAGGAAGCCGAAGATGTCGGCG 1656 Query 32118 TGGTGGGGCTCGAGGTACACGGCGAAAGATCCCTTGCG---GCGACCCCCCTGGTTTGCG 32174 || ||||||||||| | |||||| | |||||||| | || ||||||| || Sbjct 1657 TGCCACGGCTCGAGGTAAATGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTCCACG 1716 Query 32175 TATGCAGATGTCGTGTCGT---ACACCTTCAGCATGGGTACGATGCCATCAGACTCGCCA 32231 || || | | ||||| || |||| |||||| || || | ||| | ||| ||| Sbjct 1717 TA-GCGG--GCCGTGTTGTTGAACACGCGCAGCATCGGCACCAGGCCGTTCGACGTGCCG 1773 Query 32232 TTGGTCCCCTGGATCTTGGAACCACGGCCGCGAATGTCGCTCAGGTGCAGGCCGATGCCG 32291 || || || ||| | | || | ||| |||| | || |||||||||||||||| Sbjct 1774 TTCGTGCCAGCGATGTAGCTGCCGGCGGAGCGGATGTTGTGCACGTGCAGGCCGATGCCG 1833 Query 32292 CC 32293 || Sbjct 1834 CC 1835 >seq9960 Length=1600 Score = 152 bits (168), Expect = 9e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| || | ||| ||||| ||||| || |||||||| || || | | Sbjct 715 CCACCGCGCAGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 656 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || || | || || || || ||| Sbjct 655 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGATCCGGCGGA 596 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| || ||||| ||||| ||| |||||||||||| ||| | || || Sbjct 595 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATGGTGTC-GCTCGCCTCGAC 537 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || ||| || || || || |||||||| ||||| |||||||| Sbjct 536 CTCGAGGGCGATCGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 489 >seq5028 Length=838 Score = 140 bits (154), Expect = 6e-28 Identities = 166/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 68240 GCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGT 68299 ||| ||||||| || | ||| ||||| ||||| || |||||||| || || | || || Sbjct 838 GCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGT 779 Query 68300 CCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCC 68359 | || || || | |||||| ||||| || || || | || ||||| || || ||||| Sbjct 778 GCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCC 719 Query 68360 TTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCA 68418 |||||||| || ||||| ||||| ||| |||||||||||| ||| | || || || | Sbjct 718 CTCCTTGTCCTGNATCTTCGCCTTCACGTTCTCGATGGTGTC-GCTCGCCTCGACCTCGA 660 Query 68419 AGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||| || || || || || ||||| ||||| |||||||| Sbjct 659 GGGCGATCGTCTTACCGGTCAGCGTCTTCACGAAGATCTGCAT 617 >seq5244 Length=1098 Score = 98.7 bits (108), Expect = 2e-15 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 || ||||| || || ||||| |||||||| |||||||| ||||| ||| |||||||||| Sbjct 917 TGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTCTCGATGGTG 858 Query 68400 TCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTG 68458 || ||| | || || || | || ||| || || || || |||||||| ||||| ||||| Sbjct 857 TC-GCTCGCCTCGACCTCGAGGGCGATCGTCTTACCGGTCAGGGTCTTCACGAAGATCTG 799 Query 68459 CAT 68461 ||| Sbjct 798 CAT 796 >seq9962 Length=64036 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 45726 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 45783 >seq9925 Length=12123 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 7474 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 7531 >seq5682 Length=2266 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 168 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 225 >seq752 Length=962 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 205 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921506517503480