Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11] 10,059 sequences; 49,951,730 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq5028 98.7 8e-16 seq9960 91.5 1e-13 seq9923 91.5 1e-13 >seq5028 Length=838 Score = 98.7 bits (108), Expect = 8e-16 Identities = 100/128 (78%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 33909 CAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-C 33967 ||| |||||||| || || ||||| ||||||||| |||||||| || || || || | Sbjct 835 CAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC-AAGCGTGC 777 Query 33968 GCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCT 34027 | | || |||| |||||||||||||| |||||||||||||| ||| ||| | || || Sbjct 776 GGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCT 717 Query 34028 CTTTGTCC 34035 | |||||| Sbjct 716 CCTTGTCC 709 >seq9960 Length=1600 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| |||||||| || || ||||| ||||||||| |||||||| || || Sbjct 715 CCACCGCGCAGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 656 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || |||| |||||||| || || |||||||||||||||||| ||| Sbjct 655 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGATCCGGCGGA 596 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 595 ATGCCCTCCTTGTCC 581 >seq9923 Length=5125 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| |||||||| || || ||||| ||||||||| |||||||| || || Sbjct 1219 CCACCGCGCAGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 1278 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || |||| |||||||| ||||| |||||||||||||| ||| ||| Sbjct 1279 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 1338 Query 34021 ACGCTCTCTTTGTCCATAATTTT 34043 | || ||| |||||| ||| || Sbjct 1339 ATGCCCTCCTTGTCCTGAATCTT 1361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397013722507318