Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11] 10,059 sequences; 49,951,730 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq9960 152 1e-31 seq9923 132 1e-25 seq9046 84.2 5e-11 seq9045 84.2 5e-11 seq1924 84.2 5e-11 >seq9960 Length=1600 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || || || || | ||| || || ||||| || ||||| ||| Sbjct 715 CCACCGCGCAGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 656 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | || || || ||||||||||| ||||| ||| || Sbjct 655 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGATCCGGCGGA 596 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||||| |||||||| || || | ||||||| || || Sbjct 595 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACC 536 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||||||| |||||||| ||||| ||||| |||||||| Sbjct 535 TCGAGGGCGATCGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 489 >seq9923 Length=5125 Score = 132 bits (146), Expect = 1e-25 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || |||||||| || | || || || || | ||| || || ||||| || ||||| Sbjct 1216 TGGCCACCGCGCAGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCC 1275 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 ||||||||||| || || || | || || || || |||||||| ||||| || Sbjct 1276 GCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGC 1335 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || || ||||| || ||||| |||||||| || || | ||||| | || Sbjct 1336 GGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCG 1395 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 || || |||| || ||||| |||||||| ||||| ||||| |||||||| || Sbjct 1396 ACCTCCAGCGCAATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGAT 1448 >seq9046 Length=27123 Score = 84.2 bits (92), Expect = 5e-11 Identities = 127/178 (71%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 325337 GCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAG-TT 325395 ||||| || |||||| |||| | ||| ||||||||||||||||| | | | ||| || Sbjct 25587 GCGTGGTCGTTACCAAGCTGCTGACGCGAGCCGAACTGGCCCTCCGGGA-CGAGCAGATT 25529 Query 325396 GATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGC 325455 |||||| |||| || | | | ||| || | |||||||||||| | ||||| || || Sbjct 25528 GATGTTGTTGCCACCCGTAAAGTTCTGCGCCATCTTCACGATGGTCTCCTGCAGCGACGC 25469 Query 325456 TTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTC 325513 || || ||||| ||||| ||| | | ||| ||| || ||| || |||||| Sbjct 25468 CTCTCCGTGGTGGAAGGCGGAGACCTCGGAGATGTAGCCGGAGAGCTGCGCCACCTTC 25411 >seq9045 Length=27112 Score = 84.2 bits (92), Expect = 5e-11 Identities = 127/178 (71%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 325337 GCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAG-TT 325395 ||||| || |||||| |||| | ||| ||||||||||||||||| | | | ||| || Sbjct 25576 GCGTGGTCGTTACCAAGCTGCTGACGCGAGCCGAACTGGCCCTCCGGGA-CGAGCAGATT 25518 Query 325396 GATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGC 325455 |||||| |||| || | | | ||| || | |||||||||||| | ||||| || || Sbjct 25517 GATGTTGTTGCCACCCGTAAAGTTCTGCGCCATCTTCACGATGGTCTCCTGCAGCGACGC 25458 Query 325456 TTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTC 325513 || || ||||| ||||| ||| | | ||| ||| || ||| || |||||| Sbjct 25457 CTCTCCGTGGTGGAAGGCGGAGACCTCGGAGATGTAGCCGGAGAGCTGCGCCACCTTC 25400 >seq1924 Length=25061 Score = 84.2 bits (92), Expect = 5e-11 Identities = 127/178 (71%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 325337 GCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAG-TT 325395 ||||| || |||||| |||| | ||| ||||||||||||||||| || | ||| || Sbjct 2588 GCGTGGTCGTTACCAAGCTGCTGACGCGAGCCGAACTGGCCCTCCGG-GACGAGCAGATT 2646 Query 325396 GATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGC 325455 |||||| |||| || | | | ||| || | |||||||||||| | ||||| || || Sbjct 2647 GATGTTGTTGCCACCCGTAAAGTTCTGCGCCATCTTCACGATGGTCTCCTGCAGCGACGC 2706 Query 325456 TTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTC 325513 || || ||||| ||||| ||| | | ||| ||| || ||| || |||||| Sbjct 2707 CTCTCCGTGGTGGAAGGCGGAGACCTCGGAGATGTAGCCGGAGAGCTGCGCCACCTTC 2764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179502365035002