Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11] 10,059 sequences; 49,951,730 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq9046 87.8 4e-12 seq9045 87.8 4e-12 seq1924 87.8 4e-12 >seq9046 Length=27123 Score = 87.8 bits (96), Expect = 4e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 297431 AGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCG 297490 ||||| ||||| || || || | ||||| || |||||| |||| | ||| ||| Sbjct 25614 AGTTTCGTGAAGATGTAGCGCGGCGCGGCGTGGTCGTTACCAAGCTGCTGACGCGAGCCG 25555 Query 297491 AACTGGCCCTCCGGCAACAACCAG-TTGATGTTATTGCTTCCGACATAATCCTGTGCAAG 297549 |||||||||||||| | | | ||| |||||||| |||| || | | | ||| || | Sbjct 25554 AACTGGCCCTCCGGGA-CGAGCAGATTGATGTTGTTGCCACCCGTAAAGTTCTGCGCCAT 25496 Query 297550 GTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAAC 297609 |||||||||||| | ||||| || || || || ||||| ||||| ||| | | Sbjct 25495 CTTCACGATGGTCTCCTGCAGCGACGCCTCTCCGTGGTGGAAGGCGGAGACCTCGGAGAT 25436 Query 297610 GTAACCGCTGAACTGTGCAACCTTC 297634 ||| ||| || ||| || |||||| Sbjct 25435 GTAGCCGGAGAGCTGCGCCACCTTC 25411 >seq9045 Length=27112 Score = 87.8 bits (96), Expect = 4e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 297431 AGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCG 297490 ||||| ||||| || || || | ||||| || |||||| |||| | ||| ||| Sbjct 25603 AGTTTCGTGAAGATGTAGCGCGGCGCGGCGTGGTCGTTACCAAGCTGCTGACGCGAGCCG 25544 Query 297491 AACTGGCCCTCCGGCAACAACCAG-TTGATGTTATTGCTTCCGACATAATCCTGTGCAAG 297549 |||||||||||||| | | | ||| |||||||| |||| || | | | ||| || | Sbjct 25543 AACTGGCCCTCCGGGA-CGAGCAGATTGATGTTGTTGCCACCCGTAAAGTTCTGCGCCAT 25485 Query 297550 GTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAAC 297609 |||||||||||| | ||||| || || || || ||||| ||||| ||| | | Sbjct 25484 CTTCACGATGGTCTCCTGCAGCGACGCCTCTCCGTGGTGGAAGGCGGAGACCTCGGAGAT 25425 Query 297610 GTAACCGCTGAACTGTGCAACCTTC 297634 ||| ||| || ||| || |||||| Sbjct 25424 GTAGCCGGAGAGCTGCGCCACCTTC 25400 >seq1924 Length=25061 Score = 87.8 bits (96), Expect = 4e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 297431 AGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCG 297490 ||||| ||||| || || || | ||||| || |||||| |||| | ||| ||| Sbjct 2561 AGTTTCGTGAAGATGTAGCGCGGCGCGGCGTGGTCGTTACCAAGCTGCTGACGCGAGCCG 2620 Query 297491 AACTGGCCCTCCGGCAACAACCAG-TTGATGTTATTGCTTCCGACATAATCCTGTGCAAG 297549 |||||||||||||| || | ||| |||||||| |||| || | | | ||| || | Sbjct 2621 AACTGGCCCTCCGG-GACGAGCAGATTGATGTTGTTGCCACCCGTAAAGTTCTGCGCCAT 2679 Query 297550 GTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAAC 297609 |||||||||||| | ||||| || || || || ||||| ||||| ||| | | Sbjct 2680 CTTCACGATGGTCTCCTGCAGCGACGCCTCTCCGTGGTGGAAGGCGGAGACCTCGGAGAT 2739 Query 297610 GTAACCGCTGAACTGTGCAACCTTC 297634 ||| ||| || ||| || |||||| Sbjct 2740 GTAGCCGGAGAGCTGCGCCACCTTC 2764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102737859791650