Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11] 10,059 sequences; 49,951,730 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq9923 116 4e-21 seq5028 100 3e-16 seq9960 98.7 1e-15 seq6969 87.8 2e-12 seq6968 87.8 2e-12 seq6967 87.8 2e-12 >seq9923 Length=5125 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| || || | |||||| || || || |||||||| || ||| Sbjct 1219 CCACCGCGCAGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 1278 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || ||||||||||| ||| | || || ||||||||||| || || Sbjct 1279 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 1338 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || ||| | || || | ||| || || Sbjct 1339 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCGACC 1398 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | | | |||||||||||||| || || ||||| || ||||| Sbjct 1399 TCCAGCGCAATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1445 >seq5028 Length=838 Score = 100 bits (110), Expect = 3e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | |||||| || || || |||||||| || || | ||||| | || Sbjct 828 AGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCC 769 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| | || || ||||||||||| || || || || || || || Sbjct 768 TCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 709 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || || | || || || || | | | ||| Sbjct 708 TGNATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCGTC 649 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||||| || || ||||| || ||||| Sbjct 648 TTACCGGTCAGCGTCTTCACGAAGATCTGCAT 617 >seq9960 Length=1600 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| || || | |||||| || || || |||||||| || ||| Sbjct 715 CCACCGCGCAGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 656 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || ||||||||||| || | || || |||||||| || || ||| Sbjct 655 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGATCCGGCGGA 596 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || ||| | || || | || || || Sbjct 595 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACC 536 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | | | ||||| ||||||| || || ||||| || ||||| Sbjct 535 TCGAGGGCGATCGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 489 >seq6969 Length=25347 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/237 (68%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 154905 ACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTG 154964 ||||| ||||| |||| || || | ||||| ||||| || | || ||||| | | Sbjct 10653 ACGCGCTTCATGAACAGGTCGGGGATCCACAGCGCGTAGAAGAGGTCGCGCGCACGCTGG 10594 Query 154965 TCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGC 155024 || || ||| |||| ||||| | || || | | |||||||||||||||||| Sbjct 10593 TCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAGGAAGCCGAAGATGTCGGCGTGCCACGGC 10534 Query 155025 TCTAAATATACGGCCATCGCGCCTTTGCGTTT---TCCTCCTTGATCCACGTGACGCACA 155081 || | || | ||| | ||||| ||||| || || || || ||||||| || | Sbjct 10533 TCGAGGTAAATGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCC 10474 Query 155082 CAATTATTGTACACGCGCAACAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGCCA 155138 || ||| ||||||||| || || ||| |||| | | ||||||||| |||||| Sbjct 10473 GTGTTGTTGAACACGCGCAGCATCGGCACCAGGCCGTTCGACGTGCCGTTCGTGCCA 10417 >seq6968 Length=12362 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/237 (68%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 154905 ACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTG 154964 ||||| ||||| |||| || || | ||||| ||||| || | || ||||| | | Sbjct 10653 ACGCGCTTCATGAACAGGTCGGGGATCCACAGCGCGTAGAAGAGGTCGCGCGCACGCTGG 10594 Query 154965 TCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGC 155024 || || ||| |||| ||||| | || || | | |||||||||||||||||| Sbjct 10593 TCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAGGAAGCCGAAGATGTCGGCGTGCCACGGC 10534 Query 155025 TCTAAATATACGGCCATCGCGCCTTTGCGTTT---TCCTCCTTGATCCACGTGACGCACA 155081 || | || | ||| | ||||| ||||| || || || || ||||||| || | Sbjct 10533 TCGAGGTAAATGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCC 10474 Query 155082 CAATTATTGTACACGCGCAACAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGCCA 155138 || ||| ||||||||| || || ||| |||| | | ||||||||| |||||| Sbjct 10473 GTGTTGTTGAACACGCGCAGCATCGGCACCAGGCCGTTCGACGTGCCGTTCGTGCCA 10417 >seq6967 Length=22635 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/237 (68%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 154905 ACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTG 154964 ||||| ||||| |||| || || | ||||| ||||| || | || ||||| | | Sbjct 1546 ACGCGCTTCATGAACAGGTCGGGGATCCACAGCGCGTAGAAGAGGTCGCGCGCACGCTGG 1605 Query 154965 TCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGC 155024 || || ||| |||| ||||| | || || | | |||||||||||||||||| Sbjct 1606 TCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAGGAAGCCGAAGATGTCGGCGTGCCACGGC 1665 Query 155025 TCTAAATATACGGCCATCGCGCCTTTGCGTTT---TCCTCCTTGATCCACGTGACGCACA 155081 || | || | ||| | ||||| ||||| || || || || ||||||| || | Sbjct 1666 TCGAGGTAAATGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCC 1725 Query 155082 CAATTATTGTACACGCGCAACAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGCCA 155138 || ||| ||||||||| || || ||| |||| | | ||||||||| |||||| Sbjct 1726 GTGTTGTTGAACACGCGCAGCATCGGCACCAGGCCGTTCGACGTGCCGTTCGTGCCA 1782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499581975911960