Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11] 10,059 sequences; 49,951,730 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq6969 136 4e-27 seq6968 136 4e-27 seq6967 136 4e-27 seq9960 86.0 6e-12 seq9923 82.4 7e-11 >seq6969 Length=25347 Score = 136 bits (150), Expect = 4e-27 Identities = 518/803 (65%), Gaps = 19/803 (2%) Strand=Plus/Plus Query 122926 TCATGCGCGTCGCTATAGGCGTGCACGGACGCGACATCGAAAACGCGACCGAAACTTACG 122985 || ||||||| || | ||| | |||| ||||| || | |||| | || || |||| Sbjct 10140 TCCTGCGCGTTGCCCTCGGCATCCACGTCGGCGACCTCAAGAACGTGCGTGAGACGTACG 10199 Query 122986 ATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCGCCGCCGGCACGA 123045 || ||||||| | |||||||||||||| | || || | ||| |||||||||| Sbjct 10200 ATCTGATGTCGAAGGGCTTTTTCACGCACGCCACCCCGACCCTCTTCAACGCCGGCACGC 10259 Query 123046 AGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTTGCGCGAAGACAGCATCACCGGTA 123105 | ||| ||| || ||||| || | || | | | || |||||||| ||| | Sbjct 10260 CGAAGCCGCAGATGAGCTCGTGCTTCCTCGTCGCGTCGAAGGACGACAGCATTGACGGGA 10319 Query 123106 TCTATGAAACTTTGCGCGATTGCGCGTTGATTTCCAAATTTGGCGGCGGCATAGGCGTGA 123165 |||| || || || || ||||| | || ||| | ||||||||| ||| || Sbjct 10320 TCTACGACACGCTGAAGGAGTGCGCCGTCATCAGCAAGGCGGCCGGCGGCATCGGCCTGC 10379 Query 123166 ACGTGCACGACGTAAGAGGCCGCGGAAGCCGCATCAGAAGCACCGACGGAATCGCCTCCG 123225 |||||||| || | | | ||| ||| |||| |||| |||| | | || Sbjct 10380 ACGTGCACAACATCCGCTCCGCCGGCAGCTACATCGCTGGCACGAACGGCACGTCGAACG 10439 Query 123226 GGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGC- 123284 | || | | |||||||| || | ||| ||| | | || |||| |||||||||||| Sbjct 10440 GCCTGGTGCCGATGCTGCGCGTGTTCAACAACACGGCCCGCTACGTGGACCAGGGCGGCG 10499 Query 123285 --AAACGCAAAGGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATT 123342 || ||||| ||||| | || || || || || |||||||||| || | | || | Sbjct 10500 GTAAGCGCAAGGGCGCCTTCGCCATTTACCTCGAGCCGTGGCACGCCGACATCTTCGGCT 10559 Query 123343 TTTTAAATTTAAAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACG 123402 | | | || ||||||| || ||| || || || ||||| | || |||| Sbjct 10560 TCCTGCTGCTGAAGCGCAACACCGGCAAGGACGACCAGCGTGCGCGCGACCTCTTCTACG 10619 Query 123403 CTTTATGGGTACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCA 123462 | | ||| | ||||| |||| ||| ||||| || || || |||| |||| | Sbjct 10620 CGCTGTGGATCCCCGACCTGTTCATGAAGCGCGTGAAGAGTGAGGGGAAGTGGACGCTGA 10679 Query 123463 TGTGTCCCGA-TCGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTG 123521 || | ||| | | ||| || || | || ||| |||||| | |||| || || Sbjct 10680 TG-GACCCAAGTACGTGCCCGGGTCTCAGTGACTGCTACGGCGAGGAGTTCGAGCGCCTG 10738 Query 123522 TACGCGCAATACGAGCGCGAAGGCAAACAGGTTAGT-CAG--GTTCC-GGCACGTGATTT 123577 |||| || |||||| ||| ||| | | ||| ||| | ||| ||||| || | Sbjct 10739 TACGAGCGCTACGAG-GCGGAGG---GCCGCGGAGTGCAGACGATCCAGGCACAGGAGGT 10794 Query 123578 GTTCAAATTT---ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAA 123634 || ||| ||| |||| | || |||| ||||| |||| ||| |||||||| Sbjct 10795 GT---GGTTTGCGATTCTCGAGTCGCAGATCGAGACCGGCGTCCCGTTCATCCTCTACAA 10851 Query 123635 AGACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCT 123694 ||||| |||||||| || | || |||| ||| | || || || || || || || Sbjct 10852 GGACGCGTGCAACAGCAAGTCGAACCAGAAGAACCTCGGCACCATCAAGTGCTCGAACCT 10911 Query 123695 TTGCTCCGAAATTATCGAATACA 123717 ||| |||| ||| | || |||| Sbjct 10912 CTGCACCGAGATTGTGGAGTACA 10934 >seq6968 Length=12362 Score = 136 bits (150), Expect = 4e-27 Identities = 518/803 (65%), Gaps = 19/803 (2%) Strand=Plus/Plus Query 122926 TCATGCGCGTCGCTATAGGCGTGCACGGACGCGACATCGAAAACGCGACCGAAACTTACG 122985 || ||||||| || | ||| | |||| ||||| || | |||| | || || |||| Sbjct 10140 TCCTGCGCGTTGCCCTCGGCATCCACGTCGGCGACCTCAAGAACGTGCGTGAGACGTACG 10199 Query 122986 ATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCGCCGCCGGCACGA 123045 || ||||||| | |||||||||||||| | || || | ||| |||||||||| Sbjct 10200 ATCTGATGTCGAAGGGCTTTTTCACGCACGCCACCCCGACCCTCTTCAACGCCGGCACGC 10259 Query 123046 AGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTTGCGCGAAGACAGCATCACCGGTA 123105 | ||| ||| || ||||| || | || | | | || |||||||| ||| | Sbjct 10260 CGAAGCCGCAGATGAGCTCGTGCTTCCTCGTCGCGTCGAAGGACGACAGCATTGACGGGA 10319 Query 123106 TCTATGAAACTTTGCGCGATTGCGCGTTGATTTCCAAATTTGGCGGCGGCATAGGCGTGA 123165 |||| || || || || ||||| | || ||| | ||||||||| ||| || Sbjct 10320 TCTACGACACGCTGAAGGAGTGCGCCGTCATCAGCAAGGCGGCCGGCGGCATCGGCCTGC 10379 Query 123166 ACGTGCACGACGTAAGAGGCCGCGGAAGCCGCATCAGAAGCACCGACGGAATCGCCTCCG 123225 |||||||| || | | | ||| ||| |||| |||| |||| | | || Sbjct 10380 ACGTGCACAACATCCGCTCCGCCGGCAGCTACATCGCTGGCACGAACGGCACGTCGAACG 10439 Query 123226 GGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGC- 123284 | || | | |||||||| || | ||| ||| | | || |||| |||||||||||| Sbjct 10440 GCCTGGTGCCGATGCTGCGCGTGTTCAACAACACGGCCCGCTACGTGGACCAGGGCGGCG 10499 Query 123285 --AAACGCAAAGGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATT 123342 || ||||| ||||| | || || || || || |||||||||| || | | || | Sbjct 10500 GTAAGCGCAAGGGCGCCTTCGCCATTTACCTCGAGCCGTGGCACGCCGACATCTTCGGCT 10559 Query 123343 TTTTAAATTTAAAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACG 123402 | | | || ||||||| || ||| || || || ||||| | || |||| Sbjct 10560 TCCTGCTGCTGAAGCGCAACACCGGCAAGGACGACCAGCGTGCGCGCGACCTCTTCTACG 10619 Query 123403 CTTTATGGGTACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCA 123462 | | ||| | ||||| |||| ||| ||||| || || || |||| |||| | Sbjct 10620 CGCTGTGGATCCCCGACCTGTTCATGAAGCGCGTGAAGAGTGAGGGGAAGTGGACGCTGA 10679 Query 123463 TGTGTCCCGA-TCGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTG 123521 || | ||| | | ||| || || | || ||| |||||| | |||| || || Sbjct 10680 TG-GACCCAAGTACGTGCCCGGGTCTCAGTGACTGCTACGGCGAGGAGTTCGAGCGCCTG 10738 Query 123522 TACGCGCAATACGAGCGCGAAGGCAAACAGGTTAGT-CAG--GTTCC-GGCACGTGATTT 123577 |||| || |||||| ||| ||| | | ||| ||| | ||| ||||| || | Sbjct 10739 TACGAGCGCTACGAG-GCGGAGG---GCCGCGGAGTGCAGACGATCCAGGCACAGGAGGT 10794 Query 123578 GTTCAAATTT---ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAA 123634 || ||| ||| |||| | || |||| ||||| |||| ||| |||||||| Sbjct 10795 GT---GGTTTGCGATTCTCGAGTCGCAGATCGAGACCGGCGTCCCGTTCATCCTCTACAA 10851 Query 123635 AGACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCT 123694 ||||| |||||||| || | || |||| ||| | || || || || || || || Sbjct 10852 GGACGCGTGCAACAGCAAGTCGAACCAGAAGAACCTCGGCACCATCAAGTGCTCGAACCT 10911 Query 123695 TTGCTCCGAAATTATCGAATACA 123717 ||| |||| ||| | || |||| Sbjct 10912 CTGCACCGAGATTGTGGAGTACA 10934 >seq6967 Length=22635 Score = 136 bits (150), Expect = 4e-27 Identities = 518/803 (65%), Gaps = 19/803 (2%) Strand=Plus/Minus Query 122926 TCATGCGCGTCGCTATAGGCGTGCACGGACGCGACATCGAAAACGCGACCGAAACTTACG 122985 || ||||||| || | ||| | |||| ||||| || | |||| | || || |||| Sbjct 2059 TCCTGCGCGTTGCCCTCGGCATCCACGTCGGCGACCTCAAGAACGTGCGTGAGACGTACG 2000 Query 122986 ATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCGCCGCCGGCACGA 123045 || ||||||| | |||||||||||||| | || || | ||| |||||||||| Sbjct 1999 ATCTGATGTCGAAGGGCTTTTTCACGCACGCCACCCCGACCCTCTTCAACGCCGGCACGC 1940 Query 123046 AGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTTGCGCGAAGACAGCATCACCGGTA 123105 | ||| ||| || ||||| || | || | | | || |||||||| ||| | Sbjct 1939 CGAAGCCGCAGATGAGCTCGTGCTTCCTCGTCGCGTCGAAGGACGACAGCATTGACGGGA 1880 Query 123106 TCTATGAAACTTTGCGCGATTGCGCGTTGATTTCCAAATTTGGCGGCGGCATAGGCGTGA 123165 |||| || || || || ||||| | || ||| | ||||||||| ||| || Sbjct 1879 TCTACGACACGCTGAAGGAGTGCGCCGTCATCAGCAAGGCGGCCGGCGGCATCGGCCTGC 1820 Query 123166 ACGTGCACGACGTAAGAGGCCGCGGAAGCCGCATCAGAAGCACCGACGGAATCGCCTCCG 123225 |||||||| || | | | ||| ||| |||| |||| |||| | | || Sbjct 1819 ACGTGCACAACATCCGCTCCGCCGGCAGCTACATCGCTGGCACGAACGGCACGTCGAACG 1760 Query 123226 GGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGC- 123284 | || | | |||||||| || | ||| ||| | | || |||| |||||||||||| Sbjct 1759 GCCTGGTGCCGATGCTGCGCGTGTTCAACAACACGGCCCGCTACGTGGACCAGGGCGGCG 1700 Query 123285 --AAACGCAAAGGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATT 123342 || ||||| ||||| | || || || || || |||||||||| || | | || | Sbjct 1699 GTAAGCGCAAGGGCGCCTTCGCCATTTACCTCGAGCCGTGGCACGCCGACATCTTCGGCT 1640 Query 123343 TTTTAAATTTAAAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACG 123402 | | | || ||||||| || ||| || || || ||||| | || |||| Sbjct 1639 TCCTGCTGCTGAAGCGCAACACCGGCAAGGACGACCAGCGTGCGCGCGACCTCTTCTACG 1580 Query 123403 CTTTATGGGTACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCA 123462 | | ||| | ||||| |||| ||| ||||| || || || |||| |||| | Sbjct 1579 CGCTGTGGATCCCCGACCTGTTCATGAAGCGCGTGAAGAGTGAGGGGAAGTGGACGCTGA 1520 Query 123463 TGTGTCCCGA-TCGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTG 123521 || | ||| | | ||| || || | || ||| |||||| | |||| || || Sbjct 1519 TG-GACCCAAGTACGTGCCCGGGTCTCAGTGACTGCTACGGCGAGGAGTTCGAGCGCCTG 1461 Query 123522 TACGCGCAATACGAGCGCGAAGGCAAACAGGTTAGT-CAG--GTTCC-GGCACGTGATTT 123577 |||| || |||||| ||| ||| | | ||| ||| | ||| ||||| || | Sbjct 1460 TACGAGCGCTACGAG-GCGGAGG---GCCGCGGAGTGCAGACGATCCAGGCACAGGAGGT 1405 Query 123578 GTTCAAATTT---ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAA 123634 || ||| ||| |||| | || |||| ||||| |||| ||| |||||||| Sbjct 1404 GT---GGTTTGCGATTCTCGAGTCGCAGATCGAGACCGGCGTCCCGTTCATCCTCTACAA 1348 Query 123635 AGACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCT 123694 ||||| |||||||| || | || |||| ||| | || || || || || || || Sbjct 1347 GGACGCGTGCAACAGCAAGTCGAACCAGAAGAACCTCGGCACCATCAAGTGCTCGAACCT 1288 Query 123695 TTGCTCCGAAATTATCGAATACA 123717 ||| |||| ||| | || |||| Sbjct 1287 CTGCACCGAGATTGTGGAGTACA 1265 >seq9960 Length=1600 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | || ||| || |||||||| || ||||| ||||| || || || Sbjct 718 ATGCCACCGCGCAGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCC 659 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || || |||| || || || ||| | |||| || ||||| |||||| Sbjct 658 GCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGATCCGGC 599 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || || || || || || || | || | || | ||||||| | ||| Sbjct 598 GGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGTTCTCGATGGTGTCGCTCGCCTC 540 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| | | ||| || ||||| || || || || || || ||||| Sbjct 539 GACCTCGAGGGCGATCGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 489 >seq9923 Length=5125 Score = 82.4 bits (90), Expect = 7e-11 Identities = 162/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 45108 TTTATT--CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTAT 45165 |||||| || ||||| || | || ||| || |||||||| || ||||| ||||| || | Sbjct 1211 TTTATTGGCCACCGCGCAGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGT 1270 Query 45166 AATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGT 45225 | || || || || |||| || || || || | |||| || ||||||| Sbjct 1271 AGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGT 1330 Query 45226 CCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAA 45284 ||||||| ||||| || || || ||||| || || | || | || | |||||| Sbjct 1331 CCGGCGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCA-CGTTCTCGATCGTGTCGCTG 1389 Query 45285 GACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | |||||| || || | || || |||||||| || || || || || || ||||| Sbjct 1390 GCCTCGACCTCCAGCGCAATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451946366247640