Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11] 10,059 sequences; 49,951,730 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq9960 136 4e-27 seq9923 132 5e-26 seq5028 131 2e-25 seq5564 95.1 1e-14 >seq9960 Length=1600 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || || ||| || |||| |||||||| | | Sbjct 489 ATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACGATCGCCCTCGAGGTCGAGGCGAGC 548 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| ||||| | || || Sbjct 549 GACACCATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGATCA 607 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| || | ||||| ||| |||||||| Sbjct 608 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAA 667 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| |||||||||| | |||||||| || | || ||| Sbjct 668 CATCCAGAAGGAGTCGACGCTGCACCTTGTGCTGCGCCTGCGCGGTGGC 716 >seq9923 Length=5125 Score = 132 bits (146), Expect = 5e-26 Identities = 171/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| ||||| | | || |||||||||| | Sbjct 1445 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATTGCGCTGGAGGTCGAGGCCAGC 1386 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 |||| | | |||| | || | || || | ||||| ||||| || ||||||| ||| Sbjct 1385 GACACGATCGAGAACG-TGAAGGCGAAGATTCAGGACAAGGAGGGCAT-CCCGCCGGACC 1328 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | || ||||| |||||||| || | ||||| ||| ||||||| Sbjct 1327 AGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACA 1268 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||||||| ||||| |||||||||| | |||||||| || | || |||| Sbjct 1267 ACATCCAGAAGGAGTCGACGCTGCACCTTGTGCTGCGCCTGCGCGGTGGCC 1217 >seq5028 Length=838 Score = 131 bits (144), Expect = 2e-25 Identities = 162/217 (75%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || || || || ||| || |||| |||||||| | | Sbjct 617 ATGCAGATCTTCGTGAAGACGCTGACCGGTAAGACGATCGCCCTCGAGGTCGAGGCGAGC 676 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 |||| | | | |||| | || | || || | ||||| ||||| || ||||||| ||| Sbjct 677 GACACCATCGAGAACG-TGAAGGCGAAGATNCAGGACAAGGAGGGCAT-CCCGCCGGACC 734 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | || ||||| |||||||| || | ||||| || ||||||| Sbjct 735 AGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTTGCGGACTACA 794 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||| ||||| |||||||||| | |||||||| Sbjct 795 ACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTGCG 831 >seq5564 Length=1640 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/213 (71%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 |||||||||| || || || ||||| ||||| ||||| || || || || || |||| Sbjct 216 CATCACGCCAGCCTTCTGGTACTCGCCAACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTG 157 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCG-A 132709 || || || | | ||| || || ||||| | | |||||||||||| | | | Sbjct 156 CAGCGAGATCATCTCCATGAAGTCGAAGGGCTGCGTCACGTTGTAGTGCTT-CTCCAGCC 98 Query 132710 TCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT-GGTTTCGCAA 132768 ||| || ||||||| ||| || |||||||||||||| |||||||| | | ||| Sbjct 97 CCAGCGACACCAGCAGCCGGTCCGCAACGAACTCGATGTACTGCGACATCAGCTCCGC-G 39 Query 132769 TTAAGTCCCAGCAGACGCACCGGCAGCGCTTCG 132801 || | || | ||| |||||||||||||| ||| Sbjct 38 TTCATGCCGATCAGCCGCACCGGCAGCGCGTCG 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500109909522560