Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11] 10,059 sequences; 49,951,730 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq6969 111 2e-19 seq6968 111 2e-19 seq6967 111 2e-19 seq8524 93.3 5e-14 seq8523 93.3 5e-14 seq9867 82.4 9e-11 seq3866 82.4 9e-11 seq2676 82.4 9e-11 >seq6969 Length=25347 Score = 111 bits (122), Expect = 2e-19 Identities = 536/844 (64%), Gaps = 9/844 (1%) Strand=Plus/Minus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || |||||||| || || | ||||| || || ||||| ||| |||||||| | | Sbjct 10983 GGCAGGGCGATGGAGGCGAGGTTGCACACCGCGGTCTCCTCCGGCGACGTGTACTCCACA 10924 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || || | ||| || | ||| || || || | ||||| ||||| ||| || Sbjct 10923 ATCTCGGTGCAGAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCTG 10864 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 |||||||| ||||||||||| ||| | || || ||||| |||| |||| |||||| Sbjct 10863 TTGCACGCGTCCTTGTAGAGGATGAACGGGACGCCGGTCTCGATCTGCGACTCGAGAATC 10804 Query 106637 GCCTTCCACACAT-CGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTT 106695 || |||||| | | | | |||| | || | | || |||||||||||||| Sbjct 10803 GCAAACCACACCTCCTGTGCCTGGATCGTCTGCACT-CCGCGGCCCTCCGCCTCGTAGCG 10745 Query 106696 TGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGG 106755 ||| ||| || |||||||| || ||| |||||| || | | ||| Sbjct 10744 CTCGTACAGGCGCTCGAACTCCTCGCCGTAGCAGTCACTGAGACCCGGGCACGTACTTGG 10685 Query 106756 ACAGAAAAGAGACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC 106814 | || | ||| || || | ||| || || ||||||||||| ||||| || |||| Sbjct 10684 GTCCATCAGCGTCCACTTCCCCTCACTCTTC-ACGCGCTTCATGAACAGGTCGGGGATCC 10626 Query 106815 ACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACT 106874 |||| | | ||||| || | || || || | || |||| | | | Sbjct 10625 ACAGCGCGTAGAAGAGGTCGCGCGCACGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCA 10566 Query 106875 CAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTC 106934 ||||| | | ||| || |||||||| ||||| || || | |||| | ||||| | Sbjct 10565 GCAGGAAGCCGAAGATGTCGGCGTGCCACGGCTCGAGGTAAATGGCGAAGGCGCCCTTGC 10506 Query 106935 G---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAA 106991 | || || | || | || ||||| || ||| ||| || ||||| ||||| || | Sbjct 10505 GCTTACCGCCGCCCTGGTCCACGTAGCGGGCCGTGTTGTTGAACACGCGCAGCATCGGCA 10446 Query 106992 TAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCA 107050 | || | || || || || || || || | || | | | Sbjct 10445 CCAGGCCGTTCGACGTGCCGTTCGTGCCAGCGAT-GTAGCTGCCGGCGGAGCGGATGTTG 10387 Query 107051 TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTT 107110 || | ||||| || || || || ||| ||| ||| || |||||| | || || Sbjct 10386 TGCACGTGCAGGCCGATGCCGCCGGCCGCCTTGCTGATGACGGCGCACTCCTTCAGCGTG 10327 Query 107111 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 107170 | ||||| |||| || ||| ||||| |||| |||||||| | ||||||| Sbjct 10326 TCGTAGATCCCGTCAATGCTGTCGTCCTTCGACGCGACGAGGAAGCACGAGCTCATCTGC 10267 Query 107171 GGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGAC 107230 || | || || || || ||||||||||| || || ||||| |||| | || | ||| Sbjct 10266 GGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAAAAGCCCTTCGAC 10207 Query 107231 ATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACA 107290 ||| ||||| ||||| || | | ||| | |||||||||||| ||| || Sbjct 10206 ATCAGATCGTACGTCTCACGCACGTTCTTGAGGTCGCCGACGTGGATGCCGAGGGCAACG 10147 Query 107291 CGCA 107294 |||| Sbjct 10146 CGCA 10143 >seq6968 Length=12362 Score = 111 bits (122), Expect = 2e-19 Identities = 536/844 (64%), Gaps = 9/844 (1%) Strand=Plus/Minus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || |||||||| || || | ||||| || || ||||| ||| |||||||| | | Sbjct 10983 GGCAGGGCGATGGAGGCGAGGTTGCACACCGCGGTCTCCTCCGGCGACGTGTACTCCACA 10924 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || || | ||| || | ||| || || || | ||||| ||||| ||| || Sbjct 10923 ATCTCGGTGCAGAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCTG 10864 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 |||||||| ||||||||||| ||| | || || ||||| |||| |||| |||||| Sbjct 10863 TTGCACGCGTCCTTGTAGAGGATGAACGGGACGCCGGTCTCGATCTGCGACTCGAGAATC 10804 Query 106637 GCCTTCCACACAT-CGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTT 106695 || |||||| | | | | |||| | || | | || |||||||||||||| Sbjct 10803 GCAAACCACACCTCCTGTGCCTGGATCGTCTGCACT-CCGCGGCCCTCCGCCTCGTAGCG 10745 Query 106696 TGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGG 106755 ||| ||| || |||||||| || ||| |||||| || | | ||| Sbjct 10744 CTCGTACAGGCGCTCGAACTCCTCGCCGTAGCAGTCACTGAGACCCGGGCACGTACTTGG 10685 Query 106756 ACAGAAAAGAGACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC 106814 | || | ||| || || | ||| || || ||||||||||| ||||| || |||| Sbjct 10684 GTCCATCAGCGTCCACTTCCCCTCACTCTTC-ACGCGCTTCATGAACAGGTCGGGGATCC 10626 Query 106815 ACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACT 106874 |||| | | ||||| || | || || || | || |||| | | | Sbjct 10625 ACAGCGCGTAGAAGAGGTCGCGCGCACGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCA 10566 Query 106875 CAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTC 106934 ||||| | | ||| || |||||||| ||||| || || | |||| | ||||| | Sbjct 10565 GCAGGAAGCCGAAGATGTCGGCGTGCCACGGCTCGAGGTAAATGGCGAAGGCGCCCTTGC 10506 Query 106935 G---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAA 106991 | || || | || | || ||||| || ||| ||| || ||||| ||||| || | Sbjct 10505 GCTTACCGCCGCCCTGGTCCACGTAGCGGGCCGTGTTGTTGAACACGCGCAGCATCGGCA 10446 Query 106992 TAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCA 107050 | || | || || || || || || || | || | | | Sbjct 10445 CCAGGCCGTTCGACGTGCCGTTCGTGCCAGCGAT-GTAGCTGCCGGCGGAGCGGATGTTG 10387 Query 107051 TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTT 107110 || | ||||| || || || || ||| ||| ||| || |||||| | || || Sbjct 10386 TGCACGTGCAGGCCGATGCCGCCGGCCGCCTTGCTGATGACGGCGCACTCCTTCAGCGTG 10327 Query 107111 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 107170 | ||||| |||| || ||| ||||| |||| |||||||| | ||||||| Sbjct 10326 TCGTAGATCCCGTCAATGCTGTCGTCCTTCGACGCGACGAGGAAGCACGAGCTCATCTGC 10267 Query 107171 GGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGAC 107230 || | || || || || ||||||||||| || || ||||| |||| | || | ||| Sbjct 10266 GGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAAAAGCCCTTCGAC 10207 Query 107231 ATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACA 107290 ||| ||||| ||||| || | | ||| | |||||||||||| ||| || Sbjct 10206 ATCAGATCGTACGTCTCACGCACGTTCTTGAGGTCGCCGACGTGGATGCCGAGGGCAACG 10147 Query 107291 CGCA 107294 |||| Sbjct 10146 CGCA 10143 >seq6967 Length=22635 Score = 111 bits (122), Expect = 2e-19 Identities = 536/844 (64%), Gaps = 9/844 (1%) Strand=Plus/Plus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || |||||||| || || | ||||| || || ||||| ||| |||||||| | | Sbjct 1216 GGCAGGGCGATGGAGGCGAGGTTGCACACCGCGGTCTCCTCCGGCGACGTGTACTCCACA 1275 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || || | ||| || | ||| || || || | ||||| ||||| ||| || Sbjct 1276 ATCTCGGTGCAGAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCTG 1335 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 |||||||| ||||||||||| ||| | || || ||||| |||| |||| |||||| Sbjct 1336 TTGCACGCGTCCTTGTAGAGGATGAACGGGACGCCGGTCTCGATCTGCGACTCGAGAATC 1395 Query 106637 GCCTTCCACACAT-CGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTT 106695 || |||||| | | | | |||| | || | | || |||||||||||||| Sbjct 1396 GCAAACCACACCTCCTGTGCCTGGATCGTCTGCACT-CCGCGGCCCTCCGCCTCGTAGCG 1454 Query 106696 TGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGG 106755 ||| ||| || |||||||| || ||| |||||| || | | ||| Sbjct 1455 CTCGTACAGGCGCTCGAACTCCTCGCCGTAGCAGTCACTGAGACCCGGGCACGTACTTGG 1514 Query 106756 ACAGAAAAGAGACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC 106814 | || | ||| || || | ||| || || ||||||||||| ||||| || |||| Sbjct 1515 GTCCATCAGCGTCCACTTCCCCTCACTCTTC-ACGCGCTTCATGAACAGGTCGGGGATCC 1573 Query 106815 ACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACT 106874 |||| | | ||||| || | || || || | || |||| | | | Sbjct 1574 ACAGCGCGTAGAAGAGGTCGCGCGCACGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCA 1633 Query 106875 CAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTC 106934 ||||| | | ||| || |||||||| ||||| || || | |||| | ||||| | Sbjct 1634 GCAGGAAGCCGAAGATGTCGGCGTGCCACGGCTCGAGGTAAATGGCGAAGGCGCCCTTGC 1693 Query 106935 G---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAA 106991 | || || | || | || ||||| || ||| ||| || ||||| ||||| || | Sbjct 1694 GCTTACCGCCGCCCTGGTCCACGTAGCGGGCCGTGTTGTTGAACACGCGCAGCATCGGCA 1753 Query 106992 TAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCA 107050 | || | || || || || || || || | || | | | Sbjct 1754 CCAGGCCGTTCGACGTGCCGTTCGTGCCAGCGAT-GTAGCTGCCGGCGGAGCGGATGTTG 1812 Query 107051 TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTT 107110 || | ||||| || || || || ||| ||| ||| || |||||| | || || Sbjct 1813 TGCACGTGCAGGCCGATGCCGCCGGCCGCCTTGCTGATGACGGCGCACTCCTTCAGCGTG 1872 Query 107111 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 107170 | ||||| |||| || ||| ||||| |||| |||||||| | ||||||| Sbjct 1873 TCGTAGATCCCGTCAATGCTGTCGTCCTTCGACGCGACGAGGAAGCACGAGCTCATCTGC 1932 Query 107171 GGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGAC 107230 || | || || || || ||||||||||| || || ||||| |||| | || | ||| Sbjct 1933 GGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAAAAGCCCTTCGAC 1992 Query 107231 ATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACA 107290 ||| ||||| ||||| || | | ||| | |||||||||||| ||| || Sbjct 1993 ATCAGATCGTACGTCTCACGCACGTTCTTGAGGTCGCCGACGTGGATGCCGAGGGCAACG 2052 Query 107291 CGCA 107294 |||| Sbjct 2053 CGCA 2056 >seq8524 Length=6186 Score = 93.3 bits (102), Expect = 5e-14 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||||||| ||||||||||||||||||||| ||||| ||||| |||| Sbjct 15 GCTCCTATAGTGTAGTGGTTATCACTTTGGACTTTGAATCCGGAAACCCAGGTTCGAATC 74 Query 136224 CAGGTAGGAGC 136234 | ||||||||| Sbjct 75 CTGGTAGGAGC 85 >seq8523 Length=6188 Score = 93.3 bits (102), Expect = 5e-14 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||||||| ||||||||||||||||||||| ||||| ||||| |||| Sbjct 15 GCTCCTATAGTGTAGTGGTTATCACTTTGGACTTTGAATCCGGAAACCCAGGTTCGAATC 74 Query 136224 CAGGTAGGAGC 136234 | ||||||||| Sbjct 75 CTGGTAGGAGC 85 >seq9867 Length=7937 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 729 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 670 Query 136224 CAGGTAGGAG 136233 |||||||||| Sbjct 669 CAGGTAGGAG 660 >seq3866 Length=19741 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 7362 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 7421 Query 136224 CAGGTAGGAG 136233 |||||||||| Sbjct 7422 CAGGTAGGAG 7431 >seq2676 Length=752 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 151 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 210 Query 136224 CAGGTAGGAG 136233 |||||||||| Sbjct 211 CAGGTAGGAG 220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589906617289160