Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11] 10,059 sequences; 49,951,730 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq6969 138 2e-27 seq6968 138 2e-27 seq6967 138 2e-27 >seq6969 Length=25347 Score = 138 bits (152), Expect = 2e-27 Identities = 516/802 (64%), Gaps = 19/802 (2%) Strand=Plus/Minus Query 221702 AGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATC 221761 ||||| | | ||| ||||| ||||| || ||| ||| || |||| | ||| Sbjct 10980 AGGGCGATGGAGGCGAGGTTGCACACCGCGGTCTCCTCCGGCGACGTGTACTCCACAATC 10921 Query 221762 TCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTG 221821 || || |||||||| |||||||||||| || |||| || || || ||||||| ||| Sbjct 10920 TCGGTGCAGAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCTGTTG 10861 Query 221822 GCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTG 221881 |||||||||||||| || || || |||| ||||| | ||| | | | |||||| Sbjct 10860 CACGCGTCCTTGTAGAGGATGAACGGGACGCCGGTCTCGATCTGCGACTCGAGAATCGCA 10801 Query 221882 TCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCAC---CCTCGGTCTTTTCATAC 221938 ||| | || ||| || || ||| ||| | | |||| | || | | Sbjct 10800 AACCACACCTC-CTGTGCCTGGA--TCGTCTGCACTCCGCGGCCCTCCGCCTCGTAGCGC 10744 Query 221939 CCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCG 221998 || || || || |||| || ||||| || || || || ||| | Sbjct 10743 TCG---TACAGGCGCTCGAACTCCTCGCCGTAGCAGTCACTGAGACCCGGGCACGTACTT 10687 Query 221999 GGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATC 222058 || |||||| |||| | | | || || | || |||||| ||||| |||||| Sbjct 10686 GGGTCCATCAGCGTCCACTTCCCCTCACTCTTCACGCGCTTCATGAACAGGTCGGGGATC 10627 Query 222059 CACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGA 222118 |||||||| | ||||| || | | ||||| || ||| |||| |||| | |||| Sbjct 10626 CACAGCGCGTAGAAGAGGTCGCGCGCACGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGC 10567 Query 222119 TCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGT 222178 || || | || ||||| |||||||||||||| || || | ||| | ||||| Sbjct 10566 AGCAGGAAGCCGAAGATGTCGGCGTGCCACGGCTCGAGGTAAATGGCGAAGGCGCCCTTG 10507 Query 222179 CGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGT 222238 ||||| ||| ||||| ||||| | || |||||| | ||| || |||| Sbjct 10506 CGCTTACCGCCGCCCTGGTCCACGTAGCGGGCCGTGTTGTTGAACACGCGCAGCATCGGC 10447 Query 222239 ACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTT- 222297 ||||| ||||| || ||||| ||||| ||||| ||| ||| | | ||| Sbjct 10446 ACCAGGCCGTTCGACGTGCCGTTCGTGCCAGCGATGTAGCTGCCGGCGGAGCGGATGTTG 10387 Query 222298 ---ACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAG 222354 || |||| |||||| || ||||| || ||| | |||||| ||| || Sbjct 10386 TGCACGTGCAG----GCCGATGCCGCCGGCCGCCTTGCTGATGACGGCGCACTCCTTCAG 10331 Query 222355 AGTGTCCATGATGCCCTCCATAGAGTCCTCCTT-GACGTTCAGCAGAAAACAAGACGACA 222413 ||||| ||| || || || ||| ||||| |||| | || || || || || Sbjct 10330 CGTGTCGTAGATCCCGTCAATGCTGTCGTCCTTCGACG-CGACGAGGAAGCACGAGCTCA 10272 Query 222414 TCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCC 222473 |||| | || | | | |||||| || || || || ||||||| || || ||||| Sbjct 10271 TCTGCGGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAAAAGCCCT 10212 Query 222474 TAGACATCAGATCGTACGTCTC 222495 | |||||||||||||||||||| Sbjct 10211 TCGACATCAGATCGTACGTCTC 10190 >seq6968 Length=12362 Score = 138 bits (152), Expect = 2e-27 Identities = 516/802 (64%), Gaps = 19/802 (2%) Strand=Plus/Minus Query 221702 AGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATC 221761 ||||| | | ||| ||||| ||||| || ||| ||| || |||| | ||| Sbjct 10980 AGGGCGATGGAGGCGAGGTTGCACACCGCGGTCTCCTCCGGCGACGTGTACTCCACAATC 10921 Query 221762 TCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTG 221821 || || |||||||| |||||||||||| || |||| || || || ||||||| ||| Sbjct 10920 TCGGTGCAGAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCTGTTG 10861 Query 221822 GCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTG 221881 |||||||||||||| || || || |||| ||||| | ||| | | | |||||| Sbjct 10860 CACGCGTCCTTGTAGAGGATGAACGGGACGCCGGTCTCGATCTGCGACTCGAGAATCGCA 10801 Query 221882 TCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCAC---CCTCGGTCTTTTCATAC 221938 ||| | || ||| || || ||| ||| | | |||| | || | | Sbjct 10800 AACCACACCTC-CTGTGCCTGGA--TCGTCTGCACTCCGCGGCCCTCCGCCTCGTAGCGC 10744 Query 221939 CCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCG 221998 || || || || |||| || ||||| || || || || ||| | Sbjct 10743 TCG---TACAGGCGCTCGAACTCCTCGCCGTAGCAGTCACTGAGACCCGGGCACGTACTT 10687 Query 221999 GGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATC 222058 || |||||| |||| | | | || || | || |||||| ||||| |||||| Sbjct 10686 GGGTCCATCAGCGTCCACTTCCCCTCACTCTTCACGCGCTTCATGAACAGGTCGGGGATC 10627 Query 222059 CACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGA 222118 |||||||| | ||||| || | | ||||| || ||| |||| |||| | |||| Sbjct 10626 CACAGCGCGTAGAAGAGGTCGCGCGCACGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGC 10567 Query 222119 TCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGT 222178 || || | || ||||| |||||||||||||| || || | ||| | ||||| Sbjct 10566 AGCAGGAAGCCGAAGATGTCGGCGTGCCACGGCTCGAGGTAAATGGCGAAGGCGCCCTTG 10507 Query 222179 CGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGT 222238 ||||| ||| ||||| ||||| | || |||||| | ||| || |||| Sbjct 10506 CGCTTACCGCCGCCCTGGTCCACGTAGCGGGCCGTGTTGTTGAACACGCGCAGCATCGGC 10447 Query 222239 ACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTT- 222297 ||||| ||||| || ||||| ||||| ||||| ||| ||| | | ||| Sbjct 10446 ACCAGGCCGTTCGACGTGCCGTTCGTGCCAGCGATGTAGCTGCCGGCGGAGCGGATGTTG 10387 Query 222298 ---ACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAG 222354 || |||| |||||| || ||||| || ||| | |||||| ||| || Sbjct 10386 TGCACGTGCAG----GCCGATGCCGCCGGCCGCCTTGCTGATGACGGCGCACTCCTTCAG 10331 Query 222355 AGTGTCCATGATGCCCTCCATAGAGTCCTCCTT-GACGTTCAGCAGAAAACAAGACGACA 222413 ||||| ||| || || || ||| ||||| |||| | || || || || || Sbjct 10330 CGTGTCGTAGATCCCGTCAATGCTGTCGTCCTTCGACG-CGACGAGGAAGCACGAGCTCA 10272 Query 222414 TCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCC 222473 |||| | || | | | |||||| || || || || ||||||| || || ||||| Sbjct 10271 TCTGCGGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAAAAGCCCT 10212 Query 222474 TAGACATCAGATCGTACGTCTC 222495 | |||||||||||||||||||| Sbjct 10211 TCGACATCAGATCGTACGTCTC 10190 >seq6967 Length=22635 Score = 138 bits (152), Expect = 2e-27 Identities = 516/802 (64%), Gaps = 19/802 (2%) Strand=Plus/Plus Query 221702 AGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATC 221761 ||||| | | ||| ||||| ||||| || ||| ||| || |||| | ||| Sbjct 1219 AGGGCGATGGAGGCGAGGTTGCACACCGCGGTCTCCTCCGGCGACGTGTACTCCACAATC 1278 Query 221762 TCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTG 221821 || || |||||||| |||||||||||| || |||| || || || ||||||| ||| Sbjct 1279 TCGGTGCAGAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCTGTTG 1338 Query 221822 GCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTG 221881 |||||||||||||| || || || |||| ||||| | ||| | | | |||||| Sbjct 1339 CACGCGTCCTTGTAGAGGATGAACGGGACGCCGGTCTCGATCTGCGACTCGAGAATCGCA 1398 Query 221882 TCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCAC---CCTCGGTCTTTTCATAC 221938 ||| | || ||| || || ||| ||| | | |||| | || | | Sbjct 1399 AACCACACCTC-CTGTGCCTGGA--TCGTCTGCACTCCGCGGCCCTCCGCCTCGTAGCGC 1455 Query 221939 CCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCG 221998 || || || || |||| || ||||| || || || || ||| | Sbjct 1456 TCG---TACAGGCGCTCGAACTCCTCGCCGTAGCAGTCACTGAGACCCGGGCACGTACTT 1512 Query 221999 GGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATC 222058 || |||||| |||| | | | || || | || |||||| ||||| |||||| Sbjct 1513 GGGTCCATCAGCGTCCACTTCCCCTCACTCTTCACGCGCTTCATGAACAGGTCGGGGATC 1572 Query 222059 CACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGA 222118 |||||||| | ||||| || | | ||||| || ||| |||| |||| | |||| Sbjct 1573 CACAGCGCGTAGAAGAGGTCGCGCGCACGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGC 1632 Query 222119 TCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGT 222178 || || | || ||||| |||||||||||||| || || | ||| | ||||| Sbjct 1633 AGCAGGAAGCCGAAGATGTCGGCGTGCCACGGCTCGAGGTAAATGGCGAAGGCGCCCTTG 1692 Query 222179 CGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGT 222238 ||||| ||| ||||| ||||| | || |||||| | ||| || |||| Sbjct 1693 CGCTTACCGCCGCCCTGGTCCACGTAGCGGGCCGTGTTGTTGAACACGCGCAGCATCGGC 1752 Query 222239 ACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTT- 222297 ||||| ||||| || ||||| ||||| ||||| ||| ||| | | ||| Sbjct 1753 ACCAGGCCGTTCGACGTGCCGTTCGTGCCAGCGATGTAGCTGCCGGCGGAGCGGATGTTG 1812 Query 222298 ---ACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAG 222354 || |||| |||||| || ||||| || ||| | |||||| ||| || Sbjct 1813 TGCACGTGCAG----GCCGATGCCGCCGGCCGCCTTGCTGATGACGGCGCACTCCTTCAG 1868 Query 222355 AGTGTCCATGATGCCCTCCATAGAGTCCTCCTT-GACGTTCAGCAGAAAACAAGACGACA 222413 ||||| ||| || || || ||| ||||| |||| | || || || || || Sbjct 1869 CGTGTCGTAGATCCCGTCAATGCTGTCGTCCTTCGACG-CGACGAGGAAGCACGAGCTCA 1927 Query 222414 TCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCC 222473 |||| | || | | | |||||| || || || || ||||||| || || ||||| Sbjct 1928 TCTGCGGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAAAAGCCCT 1987 Query 222474 TAGACATCAGATCGTACGTCTC 222495 | |||||||||||||||||||| Sbjct 1988 TCGACATCAGATCGTACGTCTC 2009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928728009376960