Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11] 10,059 sequences; 49,951,730 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq6969 131 2e-25 seq6968 131 2e-25 seq6967 131 2e-25 seq9923 114 1e-20 seq9960 111 1e-19 seq5028 111 1e-19 >seq6969 Length=25347 Score = 131 bits (144), Expect = 2e-25 Identities = 310/468 (66%), Gaps = 3/468 (1%) Strand=Plus/Minus Query 139398 CTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTT 139457 ||| |||||| |||||||||| || || ||||||| ||| | | | |||||||| Sbjct 10657 CTTCACGCGCTTCATGAACAGGTCGGGGATCCACAGCGCGTAGAAGAGGTCGCGCGCACG 10598 Query 139458 CTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCA 139517 || || ||| || |||| || |||| ||||| | || | ||| |||||||| Sbjct 10597 CTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAGGAAGCCGAAGATGTCGGCGTGCCA 10538 Query 139518 TGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTT---GCCACCTTGATCGACGTGTCG 139574 || || || || ||||| | ||||| || || || ||| || || || |||| || Sbjct 10537 CGGCTCGAGGTAAATGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCG 10478 Query 139575 TACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCT 139634 | | || ||||| ||||||| ||||||| |||| ||| ||| || ||||| |||| Sbjct 10477 GGCCGTGTTGTTGAACACGCGCAGCATCGGCACCAGGCCGTTCGACGTGCCGTTCGTGCC 10418 Query 139635 ACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAA 139694 | |||| ||| | | |||| || || || | | |||||| |||||| | Sbjct 10417 AGCGATGTAGCTGCCGGCGGAGCGGATGTTGTGCACGTGCAGGCCGATGCCGCCGGCCGC 10358 Query 139695 TTTGGATATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTG 139754 ||| || | |||| || | || ||||| || || ||||||||||||| Sbjct 10357 CTTGCTGATGACGGCGCACTCCTTCAGCGTGTCGTAGATCCCGTCAATGCTGTCGTCCTT 10298 Query 139755 CATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGT 139814 | || ||| || ||||| || | ||||| ||||||||| || || || Sbjct 10297 CGACGCGACGAGGAAGCACGAGCTCATCTGCGGCTTCGGCGTGCCGGCGTTGAAGAGGGT 10238 Query 139815 AGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTC 139862 || | ||||||||||| | |||||||||| |||||||| || Sbjct 10237 CGGGGTGGCGTGCGTGAAAAAGCCCTTCGACATCAGATCGTACGTCTC 10190 >seq6968 Length=12362 Score = 131 bits (144), Expect = 2e-25 Identities = 310/468 (66%), Gaps = 3/468 (1%) Strand=Plus/Minus Query 139398 CTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTT 139457 ||| |||||| |||||||||| || || ||||||| ||| | | | |||||||| Sbjct 10657 CTTCACGCGCTTCATGAACAGGTCGGGGATCCACAGCGCGTAGAAGAGGTCGCGCGCACG 10598 Query 139458 CTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCA 139517 || || ||| || |||| || |||| ||||| | || | ||| |||||||| Sbjct 10597 CTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAGGAAGCCGAAGATGTCGGCGTGCCA 10538 Query 139518 TGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTT---GCCACCTTGATCGACGTGTCG 139574 || || || || ||||| | ||||| || || || ||| || || || |||| || Sbjct 10537 CGGCTCGAGGTAAATGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCG 10478 Query 139575 TACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCT 139634 | | || ||||| ||||||| ||||||| |||| ||| ||| || ||||| |||| Sbjct 10477 GGCCGTGTTGTTGAACACGCGCAGCATCGGCACCAGGCCGTTCGACGTGCCGTTCGTGCC 10418 Query 139635 ACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAA 139694 | |||| ||| | | |||| || || || | | |||||| |||||| | Sbjct 10417 AGCGATGTAGCTGCCGGCGGAGCGGATGTTGTGCACGTGCAGGCCGATGCCGCCGGCCGC 10358 Query 139695 TTTGGATATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTG 139754 ||| || | |||| || | || ||||| || || ||||||||||||| Sbjct 10357 CTTGCTGATGACGGCGCACTCCTTCAGCGTGTCGTAGATCCCGTCAATGCTGTCGTCCTT 10298 Query 139755 CATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGT 139814 | || ||| || ||||| || | ||||| ||||||||| || || || Sbjct 10297 CGACGCGACGAGGAAGCACGAGCTCATCTGCGGCTTCGGCGTGCCGGCGTTGAAGAGGGT 10238 Query 139815 AGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTC 139862 || | ||||||||||| | |||||||||| |||||||| || Sbjct 10237 CGGGGTGGCGTGCGTGAAAAAGCCCTTCGACATCAGATCGTACGTCTC 10190 >seq6967 Length=22635 Score = 131 bits (144), Expect = 2e-25 Identities = 310/468 (66%), Gaps = 3/468 (1%) Strand=Plus/Plus Query 139398 CTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTT 139457 ||| |||||| |||||||||| || || ||||||| ||| | | | |||||||| Sbjct 1542 CTTCACGCGCTTCATGAACAGGTCGGGGATCCACAGCGCGTAGAAGAGGTCGCGCGCACG 1601 Query 139458 CTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCA 139517 || || ||| || |||| || |||| ||||| | || | ||| |||||||| Sbjct 1602 CTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAGGAAGCCGAAGATGTCGGCGTGCCA 1661 Query 139518 TGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTT---GCCACCTTGATCGACGTGTCG 139574 || || || || ||||| | ||||| || || || ||| || || || |||| || Sbjct 1662 CGGCTCGAGGTAAATGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCG 1721 Query 139575 TACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCT 139634 | | || ||||| ||||||| ||||||| |||| ||| ||| || ||||| |||| Sbjct 1722 GGCCGTGTTGTTGAACACGCGCAGCATCGGCACCAGGCCGTTCGACGTGCCGTTCGTGCC 1781 Query 139635 ACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAA 139694 | |||| ||| | | |||| || || || | | |||||| |||||| | Sbjct 1782 AGCGATGTAGCTGCCGGCGGAGCGGATGTTGTGCACGTGCAGGCCGATGCCGCCGGCCGC 1841 Query 139695 TTTGGATATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTG 139754 ||| || | |||| || | || ||||| || || ||||||||||||| Sbjct 1842 CTTGCTGATGACGGCGCACTCCTTCAGCGTGTCGTAGATCCCGTCAATGCTGTCGTCCTT 1901 Query 139755 CATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGT 139814 | || ||| || ||||| || | ||||| ||||||||| || || || Sbjct 1902 CGACGCGACGAGGAAGCACGAGCTCATCTGCGGCTTCGGCGTGCCGGCGTTGAAGAGGGT 1961 Query 139815 AGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTC 139862 || | ||||||||||| | |||||||||| |||||||| || Sbjct 1962 CGGGGTGGCGTGCGTGAAAAAGCCCTTCGACATCAGATCGTACGTCTC 2009 >seq9923 Length=5125 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || || ||| |||| || || || |||| | Sbjct 1445 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATTGCGCTGGAGGTCGAGGCCAGC 1386 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || || || || || Sbjct 1385 GACACGATCGAGAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCAG 1326 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||| || || ||||||||||| | | | | || || ||| Sbjct 1325 CAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 1266 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| | ||| |||| ||||||| ||| Sbjct 1265 ATCCAGAAGGAGTCGACGCTGCACCTTGTGCTGCGCCTGCGCGGTGGC 1218 >seq9960 Length=1600 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 24698 GATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAA 24757 || || ||||||||||| | || || || |||||||| || || | ||||| || || Sbjct 483 GACACCATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACGATCGCCCTCGAGGTCGAG 542 Query 24758 GCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCC 24817 || | |||||| | || | || || |||||||| ||||| || || || || || Sbjct 543 GCGAGCGACACCATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCG 602 Query 24818 GATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGAT 24877 ||||| || || ||||||| || || || ||||||||||| | | | | || Sbjct 603 GATCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGAC 662 Query 24878 TATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || ||||| || ||||| ||||| || ||| | ||| |||| ||||||| ||| Sbjct 663 TACAACATCCAGAAGGAGTCGACGCTGCACCTTGTGCTGCGCCTGCGCGGTGGC 716 >seq5028 Length=838 Score = 111 bits (122), Expect = 1e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24698 GATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAA 24757 || || ||||||||||| | || ||||| |||||||| || || | ||||| || || Sbjct 611 GACACCATGCAGATCTTCGTGAAGACGCTGACCGGTAAGACGATCGCCCTCGAGGTCGAG 670 Query 24758 GCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCC 24817 || | |||||| | || | || || ||||| || ||||| || || || || || Sbjct 671 GCGAGCGACACCATCGAGAACGTGAAGGCGAAGATNCAGGACAAGGAGGGCATCCCGCCG 730 Query 24818 GATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGAT 24877 || || || || ||||||||||||| || ||||||||||| | | | | || Sbjct 731 GACCAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTTGCGGAC 790 Query 24878 TATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGC 24925 || ||||| || ||||| ||||| || ||| | ||| |||| ||||| Sbjct 791 TACAACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTGCGCCTGCGC 838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449841031000520