Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11] 10,059 sequences; 49,951,730 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq9923 123 2e-23 seq9960 116 2e-21 seq5028 116 2e-21 >seq9923 Length=5125 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| || ||||| | || ||||||||| ||||| ||||||| || |||| | || Sbjct 1233 CAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTC 1292 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || || |||||||| || |||||||| |||| | ||||||||||| Sbjct 1293 CTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTC 1352 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || ||| | |||| || |||||||||| || | | ||||| Sbjct 1353 CTGAATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCGACCTCCAGCGCAATGGT 1412 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 ||| || || || ||||| || |||||||||||||| Sbjct 1413 CTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGAT 1448 >seq9960 Length=1600 Score = 116 bits (128), Expect = 2e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| || ||||| | || ||||||||| ||||| ||||||| || |||| | || Sbjct 701 CAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTC 642 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || ||||||||||| || ||||| || |||| | ||||||||||| Sbjct 641 CTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGATCCGGCGGAATGCCCTCCTTGTC 582 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || ||| | || | || | |||||||| || | || || || Sbjct 581 CTGGATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCGT 522 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || || |||||||| || |||||||||||| Sbjct 521 CTTACCGGTCAGGGTCTTCACGAAGATCTGCATG 488 >seq5028 Length=838 Score = 116 bits (128), Expect = 2e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| || ||||| | || ||||||||| ||||| ||||||| || |||| | || Sbjct 829 CAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTC 770 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||| |||||||| || |||||||| |||| | ||||||||||| Sbjct 769 CTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTC 710 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || ||| | || | || | |||||||| || | || || || Sbjct 709 CTGNATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCGT 650 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || || || ||||| || |||||||||||| Sbjct 649 CTTACCGGTCAGCGTCTTCACGAAGATCTGCATG 616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325652871996521