Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11] 10,059 sequences; 49,951,730 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq6969 102 8e-17 seq6968 102 8e-17 seq6967 102 8e-17 >seq6969 Length=25347 Score = 102 bits (112), Expect = 8e-17 Identities = 223/331 (67%), Gaps = 5/331 (2%) Strand=Plus/Minus Query 151709 ATGTCGCAATGCCACGGTTCAACGTACACTGCTTGGGCGCCTTTTCGCTT---GCCACCT 151765 |||||| |||||||| || | ||| | || |||||| || ||||| ||| || Sbjct 10551 ATGTCGGCGTGCCACGGCTCGAGGTAAATGGCGAAGGCGCCCTTGCGCTTACCGCCGCCC 10492 Query 151766 TGATCCACGTGACGCACCATATTATTAAAAACTCGCAGCATTGGTAGCAGTCCGCTGGCG 151825 || ||||||| || || | || || || || |||||||| || | ||| ||| | | Sbjct 10491 TGGTCCACGTAGCGGGCCGTGTTGTTGAACACGCGCAGCATCGGCACCAGGCCGTTCGAC 10432 Query 151826 GTGCCGTTCGTAGATTTTATTTTGCTGTTGCGGCCGCGTACGCTGTTCACGTTCAATCCA 151885 ||||||||||| || | |||| | | ||| | | ||| ||||| || || Sbjct 10431 GTGCCGTTCGTGCCAGCGATGTAGCTGCCGGCGGAGCGGATGTTGTGCACGTGCAGGCCG 10372 Query 151886 ATACCGCCGCCGTGTTTAGAGATCATGGCGCAATCGTTTAATGTGTTATAGATGCCGCGA 151945 || |||||| | || ||| | |||||| || || | |||| ||||| ||| | Sbjct 10371 ATGCCGCCGGCCGCCTTGCTGATGACGGCGCACTCCTTCAGCGTGTCGTAGATCCCGTCA 10312 Query 151946 ATGCTATCG-CTTTCCATGGTCAATAGAAAACATGAACTCATCTGCGGTGTCAGAGTGCC 152004 ||||| ||| | ||| | | | || || || || ||||||||||| || | ||||| Sbjct 10311 ATGCTGTCGTCCTTCGACGCG-ACGAGGAAGCACGAGCTCATCTGCGGCTTCGGCGTGCC 10253 Query 152005 GGCAGCGAACATGGTTGGGCTTGCGTGCGTG 152035 ||| ||| | ||| ||| | ||||||||| Sbjct 10252 GGCGTTGAAGAGGGTCGGGGTGGCGTGCGTG 10222 >seq6968 Length=12362 Score = 102 bits (112), Expect = 8e-17 Identities = 223/331 (67%), Gaps = 5/331 (2%) Strand=Plus/Minus Query 151709 ATGTCGCAATGCCACGGTTCAACGTACACTGCTTGGGCGCCTTTTCGCTT---GCCACCT 151765 |||||| |||||||| || | ||| | || |||||| || ||||| ||| || Sbjct 10551 ATGTCGGCGTGCCACGGCTCGAGGTAAATGGCGAAGGCGCCCTTGCGCTTACCGCCGCCC 10492 Query 151766 TGATCCACGTGACGCACCATATTATTAAAAACTCGCAGCATTGGTAGCAGTCCGCTGGCG 151825 || ||||||| || || | || || || || |||||||| || | ||| ||| | | Sbjct 10491 TGGTCCACGTAGCGGGCCGTGTTGTTGAACACGCGCAGCATCGGCACCAGGCCGTTCGAC 10432 Query 151826 GTGCCGTTCGTAGATTTTATTTTGCTGTTGCGGCCGCGTACGCTGTTCACGTTCAATCCA 151885 ||||||||||| || | |||| | | ||| | | ||| ||||| || || Sbjct 10431 GTGCCGTTCGTGCCAGCGATGTAGCTGCCGGCGGAGCGGATGTTGTGCACGTGCAGGCCG 10372 Query 151886 ATACCGCCGCCGTGTTTAGAGATCATGGCGCAATCGTTTAATGTGTTATAGATGCCGCGA 151945 || |||||| | || ||| | |||||| || || | |||| ||||| ||| | Sbjct 10371 ATGCCGCCGGCCGCCTTGCTGATGACGGCGCACTCCTTCAGCGTGTCGTAGATCCCGTCA 10312 Query 151946 ATGCTATCG-CTTTCCATGGTCAATAGAAAACATGAACTCATCTGCGGTGTCAGAGTGCC 152004 ||||| ||| | ||| | | | || || || || ||||||||||| || | ||||| Sbjct 10311 ATGCTGTCGTCCTTCGACGCG-ACGAGGAAGCACGAGCTCATCTGCGGCTTCGGCGTGCC 10253 Query 152005 GGCAGCGAACATGGTTGGGCTTGCGTGCGTG 152035 ||| ||| | ||| ||| | ||||||||| Sbjct 10252 GGCGTTGAAGAGGGTCGGGGTGGCGTGCGTG 10222 >seq6967 Length=22635 Score = 102 bits (112), Expect = 8e-17 Identities = 223/331 (67%), Gaps = 5/331 (2%) Strand=Plus/Plus Query 151709 ATGTCGCAATGCCACGGTTCAACGTACACTGCTTGGGCGCCTTTTCGCTT---GCCACCT 151765 |||||| |||||||| || | ||| | || |||||| || ||||| ||| || Sbjct 1648 ATGTCGGCGTGCCACGGCTCGAGGTAAATGGCGAAGGCGCCCTTGCGCTTACCGCCGCCC 1707 Query 151766 TGATCCACGTGACGCACCATATTATTAAAAACTCGCAGCATTGGTAGCAGTCCGCTGGCG 151825 || ||||||| || || | || || || || |||||||| || | ||| ||| | | Sbjct 1708 TGGTCCACGTAGCGGGCCGTGTTGTTGAACACGCGCAGCATCGGCACCAGGCCGTTCGAC 1767 Query 151826 GTGCCGTTCGTAGATTTTATTTTGCTGTTGCGGCCGCGTACGCTGTTCACGTTCAATCCA 151885 ||||||||||| || | |||| | | ||| | | ||| ||||| || || Sbjct 1768 GTGCCGTTCGTGCCAGCGATGTAGCTGCCGGCGGAGCGGATGTTGTGCACGTGCAGGCCG 1827 Query 151886 ATACCGCCGCCGTGTTTAGAGATCATGGCGCAATCGTTTAATGTGTTATAGATGCCGCGA 151945 || |||||| | || ||| | |||||| || || | |||| ||||| ||| | Sbjct 1828 ATGCCGCCGGCCGCCTTGCTGATGACGGCGCACTCCTTCAGCGTGTCGTAGATCCCGTCA 1887 Query 151946 ATGCTATCG-CTTTCCATGGTCAATAGAAAACATGAACTCATCTGCGGTGTCAGAGTGCC 152004 ||||| ||| | ||| | | | || || || || ||||||||||| || | ||||| Sbjct 1888 ATGCTGTCGTCCTTCGACGCG-ACGAGGAAGCACGAGCTCATCTGCGGCTTCGGCGTGCC 1946 Query 152005 GGCAGCGAACATGGTTGGGCTTGCGTGCGTG 152035 ||| ||| | ||| ||| | ||||||||| Sbjct 1947 GGCGTTGAAGAGGGTCGGGGTGGCGTGCGTG 1977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488482571698800