Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11] 10,059 sequences; 49,951,730 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq9960 122 8e-23 seq5028 122 8e-23 seq9923 120 3e-22 >seq9960 Length=1600 Score = 122 bits (134), Expect = 8e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || | || || | || ||||||||||| || || || Sbjct 680 CTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAA 621 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| |||||||| |||| |||| || |||||||||| |||||| ||||| | Sbjct 620 GATCAGGCGCTGCTGATCCGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 561 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||||| || ||||| | | |||||| ||||| |||| || ||||| Sbjct 560 CTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCGTCTTACCGGTCAGGGTCTTCAC 501 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 500 GAAGATCTGCAT 489 >seq5028 Length=838 Score = 122 bits (134), Expect = 8e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || | || || | || ||||||||||| || ||||| Sbjct 808 CTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAA 749 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||||| || | || |||||||||| ||||| ||||| | Sbjct 748 GATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGNATCTTCGCCTTCACGTT 689 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||||| || ||||| | | |||||| ||||| |||| || ||||| Sbjct 688 CTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCGTCTTACCGGTCAGCGTCTTCAC 629 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 628 GAAGATCTGCAT 617 >seq9923 Length=5125 Score = 120 bits (132), Expect = 3e-22 Identities = 169/236 (72%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 35502 CTTTATTT-CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTG 35560 ||||||| ||||| || | | || ||| | || | ||| |||||| || |||||| Sbjct 1210 CTTTATTGGCCACCGCGCAGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTG 1269 Query 35561 TAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGG 35620 || || || | || || | || ||||||||||| || ||||| |||| ||||||||| Sbjct 1270 TAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGG 1329 Query 35621 TCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTC 35680 |||| || | || |||||||||| ||||| ||||| | | | ||||||||| Sbjct 1330 TCCGGCGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTCTCGATCGTGTCGCTG 1389 Query 35681 GATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || ||||||| || || || || || |||| || ||||| || |||||||| Sbjct 1390 GCCTCGACCTCCAGCGCAATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450736918339720