Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11] 10,059 sequences; 49,951,730 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq6969 138 1e-27 seq6968 138 1e-27 seq6967 138 1e-27 seq5028 114 1e-20 seq9960 105 7e-18 seq9923 105 7e-18 >seq6969 Length=25347 Score = 138 bits (152), Expect = 1e-27 Identities = 245/354 (69%), Gaps = 5/354 (1%) Strand=Plus/Plus Query 7735 GAAGACAGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATAC 7794 || |||||||| ||||| || ||| |||||||| || |||||| || ||| Sbjct 10301 GACGACAGCATTGACGGGATCTACGACACGCTGAAGGAGTGCGCCGTCATCAGCAAGGCG 10360 Query 7795 GGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCC 7854 | |||||| || || ||| |||| || || | ||| || ||| ||| ||||| | Sbjct 10361 GCCGGCGGCATCGGCCTGCACGTGCACAACATCCGCTCCGCCGGCAGCTACATCGCTGGC 10420 Query 7855 ACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGA 7914 || ||||| | | | ||| | | ||| ||| ||||||||||||| ||| ||| || Sbjct 10421 ACGAACGGCACGTCGAACGGCCTGGTGCCGATGCTGCGCGTGTTCAACAACACGGCCCGC 10480 Query 7915 CATGTAGACCAG---GGGGGAAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGG 7971 | || |||||| || || |||||||| |||||| ||||| || | ||||||||| Sbjct 10481 TACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCATTTACCTCGAGCCGTGG 10540 Query 7972 CACGCGGACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGA-CAGCAA 8030 ||||| ||||| | || | || ||| ||||||| || || || |||| Sbjct 10541 CACGCCGACATCTTCGGCTTCCTGCTGCTGAAGCGCAACACCGGCAAGGACGACCAGC-G 10599 Query 8031 AGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGT 8084 |||||||| || |||| || ||||| | ||||| ||||| |||| |||||| Sbjct 10600 TGCGCGCGACCTCTTCTACGCGCTGTGGATCCCCGACCTGTTCATGAAGCGCGT 10653 >seq6968 Length=12362 Score = 138 bits (152), Expect = 1e-27 Identities = 245/354 (69%), Gaps = 5/354 (1%) Strand=Plus/Plus Query 7735 GAAGACAGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATAC 7794 || |||||||| ||||| || ||| |||||||| || |||||| || ||| Sbjct 10301 GACGACAGCATTGACGGGATCTACGACACGCTGAAGGAGTGCGCCGTCATCAGCAAGGCG 10360 Query 7795 GGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCC 7854 | |||||| || || ||| |||| || || | ||| || ||| ||| ||||| | Sbjct 10361 GCCGGCGGCATCGGCCTGCACGTGCACAACATCCGCTCCGCCGGCAGCTACATCGCTGGC 10420 Query 7855 ACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGA 7914 || ||||| | | | ||| | | ||| ||| ||||||||||||| ||| ||| || Sbjct 10421 ACGAACGGCACGTCGAACGGCCTGGTGCCGATGCTGCGCGTGTTCAACAACACGGCCCGC 10480 Query 7915 CATGTAGACCAG---GGGGGAAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGG 7971 | || |||||| || || |||||||| |||||| ||||| || | ||||||||| Sbjct 10481 TACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCATTTACCTCGAGCCGTGG 10540 Query 7972 CACGCGGACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGA-CAGCAA 8030 ||||| ||||| | || | || ||| ||||||| || || || |||| Sbjct 10541 CACGCCGACATCTTCGGCTTCCTGCTGCTGAAGCGCAACACCGGCAAGGACGACCAGC-G 10599 Query 8031 AGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGT 8084 |||||||| || |||| || ||||| | ||||| ||||| |||| |||||| Sbjct 10600 TGCGCGCGACCTCTTCTACGCGCTGTGGATCCCCGACCTGTTCATGAAGCGCGT 10653 >seq6967 Length=22635 Score = 138 bits (152), Expect = 1e-27 Identities = 245/354 (69%), Gaps = 5/354 (1%) Strand=Plus/Minus Query 7735 GAAGACAGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATAC 7794 || |||||||| ||||| || ||| |||||||| || |||||| || ||| Sbjct 1898 GACGACAGCATTGACGGGATCTACGACACGCTGAAGGAGTGCGCCGTCATCAGCAAGGCG 1839 Query 7795 GGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCC 7854 | |||||| || || ||| |||| || || | ||| || ||| ||| ||||| | Sbjct 1838 GCCGGCGGCATCGGCCTGCACGTGCACAACATCCGCTCCGCCGGCAGCTACATCGCTGGC 1779 Query 7855 ACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGA 7914 || ||||| | | | ||| | | ||| ||| ||||||||||||| ||| ||| || Sbjct 1778 ACGAACGGCACGTCGAACGGCCTGGTGCCGATGCTGCGCGTGTTCAACAACACGGCCCGC 1719 Query 7915 CATGTAGACCAG---GGGGGAAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGG 7971 | || |||||| || || |||||||| |||||| ||||| || | ||||||||| Sbjct 1718 TACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCATTTACCTCGAGCCGTGG 1659 Query 7972 CACGCGGACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGA-CAGCAA 8030 ||||| ||||| | || | || ||| ||||||| || || || |||| Sbjct 1658 CACGCCGACATCTTCGGCTTCCTGCTGCTGAAGCGCAACACCGGCAAGGACGACCAGC-G 1600 Query 8031 AGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGT 8084 |||||||| || |||| || ||||| | ||||| ||||| |||| |||||| Sbjct 1599 TGCGCGCGACCTCTTCTACGCGCTGTGGATCCCCGACCTGTTCATGAAGCGCGT 1546 >seq5028 Length=838 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||||||||| ||||| || ||||| || ||||||||||| ||| ||| | Sbjct 834 AGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGG 775 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| ||||| |||| |||||||| || ||||| ||||| || Sbjct 774 CCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 715 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | |||||| || || || ||||| | Sbjct 714 TTGTCCTGNATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCG 655 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || |||||||| | || || ||||| || ||||| Sbjct 654 ATCGTCTTACCGGTCAGCGTCTTCACGAAGATCTGCAT 617 >seq9960 Length=1600 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| ||||| || ||||| || ||||||||||| | | ||| | Sbjct 706 AGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGG 647 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || |||| ||||||||||| ||||| ||||| || Sbjct 646 CCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGATCCGGCGGAATGCCCTCC 587 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | |||||| || || || ||||| | Sbjct 586 TTGTCCTGGATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCG 527 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || |||||||| | || || ||||| || ||||| Sbjct 526 ATCGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 489 >seq9923 Length=5125 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| ||||| || ||||| || ||||||||||| | | ||| | Sbjct 1228 AGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGG 1287 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| ||||| |||| |||||||| || ||||| ||||| || Sbjct 1288 CCCTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 1347 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || || || || | |||||| | || || || || | | Sbjct 1348 TTGTCCTGAATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCGACCTCCAGCGCA 1407 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| | || || ||||| || ||||| Sbjct 1408 ATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505334852468680