Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11]
10,059 sequences; 49,951,730 total letters
Query= NC_027925.1
Length=496396
Score E
Sequences producing significant alignments: (Bits) Value
seq6969 102 3e-16
seq6968 102 3e-16
seq6967 102 3e-16
>seq6969
Length=25347
Score = 102 bits (112), Expect = 3e-16
Identities = 290/435 (67%), Gaps = 8/435 (2%)
Strand=Plus/Plus
Query 254834 GAAGACAGTATCCAAGGCATCTTCGAAACGCTATCGCGATGCGCATTCGTGAGTCAATCG 254893
|| ||||| || | || |||| ||| ||||| | ||||| || | || | ||
Sbjct 10301 GACGACAGCATTGACGGGATCTACGACACGCTGAAGGAGTGCGCCGTCATCAGCAAGGCG 10360
Query 254894 AGCGGCGGCGTGGGACTCAACATCTCCAACGTGCGCGCCAGCGGCACACCGATTCGCTCG 254953
||||||| | || || || | |||| | ||| || ||||| || |||| |
Sbjct 10361 GCCGGCGGCATCGGCCTGCACGTGCACAACATCCGCTCCGCCGGCAGCTACAT-CGCTGG 10419
Query 254954 -ACGAACGG-ACGGAGCGGCGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTC 255011
|||||||| ||| | |||| | | || ||| | || |||||||||||| ||| |
Sbjct 10420 CACGAACGGCACGTCGAA-CGGCCTGGTGCCGATGCTGCGCGTGTTCAACAACACGGCCC 10478
Query 255012 GCTACGTCGATCAAGGGGGCGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGT 255071
||||||| || || || ||||| || ||| || || ||| |||| ||||| |||||||
Sbjct 10479 GCTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCATTTACCTCGAGCCGT 10538
Query 255072 GGCACGCCGACATTGAACGGTTTTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGA 255131
||||||||||||| | || | |||||| ||| ||||||| || || | |
Sbjct 10539 GGCACGCCGACATCTTCGGCTTCCTGCTGCTGAAGCGCAACACCGGCAAGGACGACCAGC 10598
Query 255132 TCGCCCGCGACATCTACACCGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAAC 255191
|| |||||| ||| | ||| | ||| | ||| ||||| ||| |||||| |
Sbjct 10599 GTGCGCGCGACCTCTTCTACGCGCTGTGGATCCCCGACCTGTTCATGAAGCGCGTGAAGA 10658
Query 255192 GAGACGAGACCTGGAGCCTCATGTGTCCCAACTTATCGCCC-GGTCT-AGTCGACTCTTG 255249
| || | || |||| || ||| | ||||| | |||| ||||| ||| |||| |
Sbjct 10659 GTGAGGGGAAGTGGACGCTGATG-GACCCAAGTACGTGCCCGGGTCTCAGT-GACTGCTA 10716
Query 255250 GGGTGACGAGTTTGA 255264
|| || ||||| ||
Sbjct 10717 CGGCGAGGAGTTCGA 10731
Score = 86.0 bits (94), Expect = 2e-11
Identities = 204/306 (67%), Gaps = 2/306 (1%)
Strand=Plus/Plus
Query 256143 TGCGCAACTCGCAACGATTGGCGCCCATGCCAACCGCCAGCACCGCTCAAATCCTGGGTA 256202
|||||||||| | | | ||||| ||||| |||||| ||| | |||||||| || |
Sbjct 11415 TGCGCAACTCTCTCCTGCTTGCGCCGATGCCCACCGCCTCGACCTCGCAAATCCTCGGCA 11474
Query 256203 ACGTGGAAAGCATCGAACCCCTGACTACCAACTTCTTCTCGCGCCGCGTTCGCTCCGGCG 256262
|| || || |||| || | || | ||| ||| || ||||| | |||||
Sbjct 11475 ACAACGAGTGCTTCGAGCCTTTCACCTCGAACATCTATGTTCGTCGCGTGCTGAGCGGCG 11534
Query 256263 AGTTCGCCGTGGTGAACCAGTACTTGGTGGACGACTTGGTACGACTCGGTCTGTGGAACG 256322
||||| | ||||||||| ||||| | ||| ||| | | | ||| |||||||| |
Sbjct 11535 AGTTCCCGGTGGTGAACAAGTACCTCGTGATGGACCTCATTAAGCGCGGCCTGTGGAATG 11594
Query 256323 AGAAGATGCAACAACGC-ATAATTCGGGCCCGTGGGTCGGTGCAGAACATTGAGCGCTTG 256381
||| ||||| ||||| || || | || || |||| || ||| || || |
Sbjct 11595 AGACGATGCG-CAACGAGATCATCTCCTACAACGGCTCCGTGCTGACCATCGACAGCATC 11653
Query 256382 CCGTTCCGCTTGCGCGAGGTATACCGCACGGTATGGGAGATGCCGCAACGATTGTTGGTC 256441
||| | | || ||| | ||||||||||| |||||||| ||||| || | || ||
Sbjct 11654 CCGGACGACCTGAAGGAGCTGTACCGCACGGTGTGGGAGATCCCGCAGCGCAAGCTGATC 11713
Query 256442 GACTTG 256447
||| ||
Sbjct 11714 GACATG 11719
>seq6968
Length=12362
Score = 102 bits (112), Expect = 3e-16
Identities = 290/435 (67%), Gaps = 8/435 (2%)
Strand=Plus/Plus
Query 254834 GAAGACAGTATCCAAGGCATCTTCGAAACGCTATCGCGATGCGCATTCGTGAGTCAATCG 254893
|| ||||| || | || |||| ||| ||||| | ||||| || | || | ||
Sbjct 10301 GACGACAGCATTGACGGGATCTACGACACGCTGAAGGAGTGCGCCGTCATCAGCAAGGCG 10360
Query 254894 AGCGGCGGCGTGGGACTCAACATCTCCAACGTGCGCGCCAGCGGCACACCGATTCGCTCG 254953
||||||| | || || || | |||| | ||| || ||||| || |||| |
Sbjct 10361 GCCGGCGGCATCGGCCTGCACGTGCACAACATCCGCTCCGCCGGCAGCTACAT-CGCTGG 10419
Query 254954 -ACGAACGG-ACGGAGCGGCGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTC 255011
|||||||| ||| | |||| | | || ||| | || |||||||||||| ||| |
Sbjct 10420 CACGAACGGCACGTCGAA-CGGCCTGGTGCCGATGCTGCGCGTGTTCAACAACACGGCCC 10478
Query 255012 GCTACGTCGATCAAGGGGGCGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGT 255071
||||||| || || || ||||| || ||| || || ||| |||| ||||| |||||||
Sbjct 10479 GCTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCATTTACCTCGAGCCGT 10538
Query 255072 GGCACGCCGACATTGAACGGTTTTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGA 255131
||||||||||||| | || | |||||| ||| ||||||| || || | |
Sbjct 10539 GGCACGCCGACATCTTCGGCTTCCTGCTGCTGAAGCGCAACACCGGCAAGGACGACCAGC 10598
Query 255132 TCGCCCGCGACATCTACACCGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAAC 255191
|| |||||| ||| | ||| | ||| | ||| ||||| ||| |||||| |
Sbjct 10599 GTGCGCGCGACCTCTTCTACGCGCTGTGGATCCCCGACCTGTTCATGAAGCGCGTGAAGA 10658
Query 255192 GAGACGAGACCTGGAGCCTCATGTGTCCCAACTTATCGCCC-GGTCT-AGTCGACTCTTG 255249
| || | || |||| || ||| | ||||| | |||| ||||| ||| |||| |
Sbjct 10659 GTGAGGGGAAGTGGACGCTGATG-GACCCAAGTACGTGCCCGGGTCTCAGT-GACTGCTA 10716
Query 255250 GGGTGACGAGTTTGA 255264
|| || ||||| ||
Sbjct 10717 CGGCGAGGAGTTCGA 10731
Score = 86.0 bits (94), Expect = 2e-11
Identities = 204/306 (67%), Gaps = 2/306 (1%)
Strand=Plus/Plus
Query 256143 TGCGCAACTCGCAACGATTGGCGCCCATGCCAACCGCCAGCACCGCTCAAATCCTGGGTA 256202
|||||||||| | | | ||||| ||||| |||||| ||| | |||||||| || |
Sbjct 11415 TGCGCAACTCTCTCCTGCTTGCGCCGATGCCCACCGCCTCGACCTCGCAAATCCTCGGCA 11474
Query 256203 ACGTGGAAAGCATCGAACCCCTGACTACCAACTTCTTCTCGCGCCGCGTTCGCTCCGGCG 256262
|| || || |||| || | || | ||| ||| || ||||| | |||||
Sbjct 11475 ACAACGAGTGCTTCGAGCCTTTCACCTCGAACATCTATGTTCGTCGCGTGCTGAGCGGCG 11534
Query 256263 AGTTCGCCGTGGTGAACCAGTACTTGGTGGACGACTTGGTACGACTCGGTCTGTGGAACG 256322
||||| | ||||||||| ||||| | ||| ||| | | | ||| |||||||| |
Sbjct 11535 AGTTCCCGGTGGTGAACAAGTACCTCGTGATGGACCTCATTAAGCGCGGCCTGTGGAATG 11594
Query 256323 AGAAGATGCAACAACGC-ATAATTCGGGCCCGTGGGTCGGTGCAGAACATTGAGCGCTTG 256381
||| ||||| ||||| || || | || || |||| || ||| || || |
Sbjct 11595 AGACGATGCG-CAACGAGATCATCTCCTACAACGGCTCCGTGCTGACCATCGACAGCATC 11653
Query 256382 CCGTTCCGCTTGCGCGAGGTATACCGCACGGTATGGGAGATGCCGCAACGATTGTTGGTC 256441
||| | | || ||| | ||||||||||| |||||||| ||||| || | || ||
Sbjct 11654 CCGGACGACCTGAAGGAGCTGTACCGCACGGTGTGGGAGATCCCGCAGCGCAAGCTGATC 11713
Query 256442 GACTTG 256447
||| ||
Sbjct 11714 GACATG 11719
>seq6967
Length=22635
Score = 102 bits (112), Expect = 3e-16
Identities = 290/435 (67%), Gaps = 8/435 (2%)
Strand=Plus/Minus
Query 254834 GAAGACAGTATCCAAGGCATCTTCGAAACGCTATCGCGATGCGCATTCGTGAGTCAATCG 254893
|| ||||| || | || |||| ||| ||||| | ||||| || | || | ||
Sbjct 1898 GACGACAGCATTGACGGGATCTACGACACGCTGAAGGAGTGCGCCGTCATCAGCAAGGCG 1839
Query 254894 AGCGGCGGCGTGGGACTCAACATCTCCAACGTGCGCGCCAGCGGCACACCGATTCGCTCG 254953
||||||| | || || || | |||| | ||| || ||||| || |||| |
Sbjct 1838 GCCGGCGGCATCGGCCTGCACGTGCACAACATCCGCTCCGCCGGCAGCTACAT-CGCTGG 1780
Query 254954 -ACGAACGG-ACGGAGCGGCGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTC 255011
|||||||| ||| | |||| | | || ||| | || |||||||||||| ||| |
Sbjct 1779 CACGAACGGCACGTCGAA-CGGCCTGGTGCCGATGCTGCGCGTGTTCAACAACACGGCCC 1721
Query 255012 GCTACGTCGATCAAGGGGGCGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGT 255071
||||||| || || || ||||| || ||| || || ||| |||| ||||| |||||||
Sbjct 1720 GCTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCATTTACCTCGAGCCGT 1661
Query 255072 GGCACGCCGACATTGAACGGTTTTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGA 255131
||||||||||||| | || | |||||| ||| ||||||| || || | |
Sbjct 1660 GGCACGCCGACATCTTCGGCTTCCTGCTGCTGAAGCGCAACACCGGCAAGGACGACCAGC 1601
Query 255132 TCGCCCGCGACATCTACACCGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAAC 255191
|| |||||| ||| | ||| | ||| | ||| ||||| ||| |||||| |
Sbjct 1600 GTGCGCGCGACCTCTTCTACGCGCTGTGGATCCCCGACCTGTTCATGAAGCGCGTGAAGA 1541
Query 255192 GAGACGAGACCTGGAGCCTCATGTGTCCCAACTTATCGCCC-GGTCT-AGTCGACTCTTG 255249
| || | || |||| || ||| | ||||| | |||| ||||| ||| |||| |
Sbjct 1540 GTGAGGGGAAGTGGACGCTGATG-GACCCAAGTACGTGCCCGGGTCTCAGT-GACTGCTA 1483
Query 255250 GGGTGACGAGTTTGA 255264
|| || ||||| ||
Sbjct 1482 CGGCGAGGAGTTCGA 1468
Score = 86.0 bits (94), Expect = 2e-11
Identities = 204/306 (67%), Gaps = 2/306 (1%)
Strand=Plus/Minus
Query 256143 TGCGCAACTCGCAACGATTGGCGCCCATGCCAACCGCCAGCACCGCTCAAATCCTGGGTA 256202
|||||||||| | | | ||||| ||||| |||||| ||| | |||||||| || |
Sbjct 784 TGCGCAACTCTCTCCTGCTTGCGCCGATGCCCACCGCCTCGACCTCGCAAATCCTCGGCA 725
Query 256203 ACGTGGAAAGCATCGAACCCCTGACTACCAACTTCTTCTCGCGCCGCGTTCGCTCCGGCG 256262
|| || || |||| || | || | ||| ||| || ||||| | |||||
Sbjct 724 ACAACGAGTGCTTCGAGCCTTTCACCTCGAACATCTATGTTCGTCGCGTGCTGAGCGGCG 665
Query 256263 AGTTCGCCGTGGTGAACCAGTACTTGGTGGACGACTTGGTACGACTCGGTCTGTGGAACG 256322
||||| | ||||||||| ||||| | ||| ||| | | | ||| |||||||| |
Sbjct 664 AGTTCCCGGTGGTGAACAAGTACCTCGTGATGGACCTCATTAAGCGCGGCCTGTGGAATG 605
Query 256323 AGAAGATGCAACAACGC-ATAATTCGGGCCCGTGGGTCGGTGCAGAACATTGAGCGCTTG 256381
||| ||||| ||||| || || | || || |||| || ||| || || |
Sbjct 604 AGACGATGCG-CAACGAGATCATCTCCTACAACGGCTCCGTGCTGACCATCGACAGCATC 546
Query 256382 CCGTTCCGCTTGCGCGAGGTATACCGCACGGTATGGGAGATGCCGCAACGATTGTTGGTC 256441
||| | | || ||| | ||||||||||| |||||||| ||||| || | || ||
Sbjct 545 CCGGACGACCTGAAGGAGCTGTACCGCACGGTGTGGGAGATCCCGCAGCGCAAGCTGATC 486
Query 256442 GACTTG 256447
||| ||
Sbjct 485 GACATG 480
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1588131293767255
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