Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11] 10,059 sequences; 49,951,730 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq6969 100 4e-16 seq6968 100 4e-16 seq6967 100 4e-16 seq8524 93.3 5e-14 seq8523 93.3 5e-14 seq9867 82.4 1e-10 seq3866 82.4 1e-10 seq2676 82.4 1e-10 >seq6969 Length=25347 Score = 100 bits (110), Expect = 4e-16 Identities = 548/868 (63%), Gaps = 9/868 (1%) Strand=Plus/Minus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || |||||||| || || | ||||| || || ||||| ||| |||||||| | | Sbjct 10983 GGCAGGGCGATGGAGGCGAGGTTGCACACCGCGGTCTCCTCCGGCGACGTGTACTCCACA 10924 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || || || | ||| || | ||| || || || | ||||| ||||| ||| || Sbjct 10923 ATCTCGGTGCAGAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCTG 10864 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 |||||||| ||||||||||| ||| | || || ||||| |||| || | |||||| Sbjct 10863 TTGCACGCGTCCTTGTAGAGGATGAACGGGACGCCGGTCTCGATCTGCGACTCGAGAATC 10804 Query 111410 GCCTTCCAAACAT-CGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTT 111468 || ||| || | | | | |||| | || | | || |||||||||||||| Sbjct 10803 GCAAACCACACCTCCTGTGCCTGGATCGTCTGCACT-CCGCGGCCCTCCGCCTCGTAGCG 10745 Query 111469 TGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGG 111528 ||| ||| || |||||||| || ||| |||||| || | | ||| Sbjct 10744 CTCGTACAGGCGCTCGAACTCCTCGCCGTAGCAGTCACTGAGACCCGGGCACGTACTTGG 10685 Query 111529 ACAGAAAAGAGACCA-TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC 111587 | || | ||| || || | || || || ||||||||||| ||||| || |||| Sbjct 10684 GTCCATCAGCGTCCACTTCCCCTCACTCTTC-ACGCGCTTCATGAACAGGTCGGGGATCC 10626 Query 111588 ACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACT 111647 |||| | | ||||| || | || || || | || |||| | | | Sbjct 10625 ACAGCGCGTAGAAGAGGTCGCGCGCACGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCA 10566 Query 111648 CAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTC 111707 ||||| | | ||| || |||||||| ||||| || || | |||| | ||||| | Sbjct 10565 GCAGGAAGCCGAAGATGTCGGCGTGCCACGGCTCGAGGTAAATGGCGAAGGCGCCCTTGC 10506 Query 111708 G---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAA 111764 | || || | || | || ||||| || ||| ||| || ||||| ||||| || | Sbjct 10505 GCTTACCGCCGCCCTGGTCCACGTAGCGGGCCGTGTTGTTGAACACGCGCAGCATCGGCA 10446 Query 111765 TAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCA 111823 | || | || || || || || || || | || | | | Sbjct 10445 CCAGGCCGTTCGACGTGCCGTTCGTGCCAGCGAT-GTAGCTGCCGGCGGAGCGGATGTTG 10387 Query 111824 TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTT 111883 || | ||||| || || || || ||| ||| ||| || |||||| | || || Sbjct 10386 TGCACGTGCAGGCCGATGCCGCCGGCCGCCTTGCTGATGACGGCGCACTCCTTCAGCGTG 10327 Query 111884 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 111943 | ||||| |||| || ||| ||||| |||| |||||||| | ||||||| Sbjct 10326 TCGTAGATCCCGTCAATGCTGTCGTCCTTCGACGCGACGAGGAAGCACGAGCTCATCTGC 10267 Query 111944 GGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGAC 112003 || | || || || || ||||||||||| || || ||||| |||| | || | ||| Sbjct 10266 GGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAAAAGCCCTTCGAC 10207 Query 112004 ATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACC 112063 ||| ||||| ||||| || | | ||| | |||||||||||| || || Sbjct 10206 ATCAGATCGTACGTCTCACGCACGTTCTTGAGGTCGCCGACGTGGATGCCGAGGGCAACG 10147 Query 112064 CGCATGAACATGTACTGTGGGGTTTCCA 112091 |||| ||| | | ||| ||| ||||| Sbjct 10146 CGCAGGAAGAGCTGCTGCGGGCGTTCCA 10119 >seq6968 Length=12362 Score = 100 bits (110), Expect = 4e-16 Identities = 548/868 (63%), Gaps = 9/868 (1%) Strand=Plus/Minus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || |||||||| || || | ||||| || || ||||| ||| |||||||| | | Sbjct 10983 GGCAGGGCGATGGAGGCGAGGTTGCACACCGCGGTCTCCTCCGGCGACGTGTACTCCACA 10924 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || || || | ||| || | ||| || || || | ||||| ||||| ||| || Sbjct 10923 ATCTCGGTGCAGAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCTG 10864 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 |||||||| ||||||||||| ||| | || || ||||| |||| || | |||||| Sbjct 10863 TTGCACGCGTCCTTGTAGAGGATGAACGGGACGCCGGTCTCGATCTGCGACTCGAGAATC 10804 Query 111410 GCCTTCCAAACAT-CGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTT 111468 || ||| || | | | | |||| | || | | || |||||||||||||| Sbjct 10803 GCAAACCACACCTCCTGTGCCTGGATCGTCTGCACT-CCGCGGCCCTCCGCCTCGTAGCG 10745 Query 111469 TGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGG 111528 ||| ||| || |||||||| || ||| |||||| || | | ||| Sbjct 10744 CTCGTACAGGCGCTCGAACTCCTCGCCGTAGCAGTCACTGAGACCCGGGCACGTACTTGG 10685 Query 111529 ACAGAAAAGAGACCA-TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC 111587 | || | ||| || || | || || || ||||||||||| ||||| || |||| Sbjct 10684 GTCCATCAGCGTCCACTTCCCCTCACTCTTC-ACGCGCTTCATGAACAGGTCGGGGATCC 10626 Query 111588 ACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACT 111647 |||| | | ||||| || | || || || | || |||| | | | Sbjct 10625 ACAGCGCGTAGAAGAGGTCGCGCGCACGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCA 10566 Query 111648 CAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTC 111707 ||||| | | ||| || |||||||| ||||| || || | |||| | ||||| | Sbjct 10565 GCAGGAAGCCGAAGATGTCGGCGTGCCACGGCTCGAGGTAAATGGCGAAGGCGCCCTTGC 10506 Query 111708 G---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAA 111764 | || || | || | || ||||| || ||| ||| || ||||| ||||| || | Sbjct 10505 GCTTACCGCCGCCCTGGTCCACGTAGCGGGCCGTGTTGTTGAACACGCGCAGCATCGGCA 10446 Query 111765 TAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCA 111823 | || | || || || || || || || | || | | | Sbjct 10445 CCAGGCCGTTCGACGTGCCGTTCGTGCCAGCGAT-GTAGCTGCCGGCGGAGCGGATGTTG 10387 Query 111824 TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTT 111883 || | ||||| || || || || ||| ||| ||| || |||||| | || || Sbjct 10386 TGCACGTGCAGGCCGATGCCGCCGGCCGCCTTGCTGATGACGGCGCACTCCTTCAGCGTG 10327 Query 111884 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 111943 | ||||| |||| || ||| ||||| |||| |||||||| | ||||||| Sbjct 10326 TCGTAGATCCCGTCAATGCTGTCGTCCTTCGACGCGACGAGGAAGCACGAGCTCATCTGC 10267 Query 111944 GGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGAC 112003 || | || || || || ||||||||||| || || ||||| |||| | || | ||| Sbjct 10266 GGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAAAAGCCCTTCGAC 10207 Query 112004 ATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACC 112063 ||| ||||| ||||| || | | ||| | |||||||||||| || || Sbjct 10206 ATCAGATCGTACGTCTCACGCACGTTCTTGAGGTCGCCGACGTGGATGCCGAGGGCAACG 10147 Query 112064 CGCATGAACATGTACTGTGGGGTTTCCA 112091 |||| ||| | | ||| ||| ||||| Sbjct 10146 CGCAGGAAGAGCTGCTGCGGGCGTTCCA 10119 >seq6967 Length=22635 Score = 100 bits (110), Expect = 4e-16 Identities = 548/868 (63%), Gaps = 9/868 (1%) Strand=Plus/Plus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || |||||||| || || | ||||| || || ||||| ||| |||||||| | | Sbjct 1216 GGCAGGGCGATGGAGGCGAGGTTGCACACCGCGGTCTCCTCCGGCGACGTGTACTCCACA 1275 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || || || | ||| || | ||| || || || | ||||| ||||| ||| || Sbjct 1276 ATCTCGGTGCAGAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCTG 1335 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 |||||||| ||||||||||| ||| | || || ||||| |||| || | |||||| Sbjct 1336 TTGCACGCGTCCTTGTAGAGGATGAACGGGACGCCGGTCTCGATCTGCGACTCGAGAATC 1395 Query 111410 GCCTTCCAAACAT-CGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTT 111468 || ||| || | | | | |||| | || | | || |||||||||||||| Sbjct 1396 GCAAACCACACCTCCTGTGCCTGGATCGTCTGCACT-CCGCGGCCCTCCGCCTCGTAGCG 1454 Query 111469 TGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGG 111528 ||| ||| || |||||||| || ||| |||||| || | | ||| Sbjct 1455 CTCGTACAGGCGCTCGAACTCCTCGCCGTAGCAGTCACTGAGACCCGGGCACGTACTTGG 1514 Query 111529 ACAGAAAAGAGACCA-TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC 111587 | || | ||| || || | || || || ||||||||||| ||||| || |||| Sbjct 1515 GTCCATCAGCGTCCACTTCCCCTCACTCTTC-ACGCGCTTCATGAACAGGTCGGGGATCC 1573 Query 111588 ACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACT 111647 |||| | | ||||| || | || || || | || |||| | | | Sbjct 1574 ACAGCGCGTAGAAGAGGTCGCGCGCACGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCA 1633 Query 111648 CAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTC 111707 ||||| | | ||| || |||||||| ||||| || || | |||| | ||||| | Sbjct 1634 GCAGGAAGCCGAAGATGTCGGCGTGCCACGGCTCGAGGTAAATGGCGAAGGCGCCCTTGC 1693 Query 111708 G---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAA 111764 | || || | || | || ||||| || ||| ||| || ||||| ||||| || | Sbjct 1694 GCTTACCGCCGCCCTGGTCCACGTAGCGGGCCGTGTTGTTGAACACGCGCAGCATCGGCA 1753 Query 111765 TAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCA 111823 | || | || || || || || || || | || | | | Sbjct 1754 CCAGGCCGTTCGACGTGCCGTTCGTGCCAGCGAT-GTAGCTGCCGGCGGAGCGGATGTTG 1812 Query 111824 TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTT 111883 || | ||||| || || || || ||| ||| ||| || |||||| | || || Sbjct 1813 TGCACGTGCAGGCCGATGCCGCCGGCCGCCTTGCTGATGACGGCGCACTCCTTCAGCGTG 1872 Query 111884 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 111943 | ||||| |||| || ||| ||||| |||| |||||||| | ||||||| Sbjct 1873 TCGTAGATCCCGTCAATGCTGTCGTCCTTCGACGCGACGAGGAAGCACGAGCTCATCTGC 1932 Query 111944 GGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGAC 112003 || | || || || || ||||||||||| || || ||||| |||| | || | ||| Sbjct 1933 GGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAAAAGCCCTTCGAC 1992 Query 112004 ATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACC 112063 ||| ||||| ||||| || | | ||| | |||||||||||| || || Sbjct 1993 ATCAGATCGTACGTCTCACGCACGTTCTTGAGGTCGCCGACGTGGATGCCGAGGGCAACG 2052 Query 112064 CGCATGAACATGTACTGTGGGGTTTCCA 112091 |||| ||| | | ||| ||| ||||| Sbjct 2053 CGCAGGAAGAGCTGCTGCGGGCGTTCCA 2080 >seq8524 Length=6186 Score = 93.3 bits (102), Expect = 5e-14 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||||||| ||||||||||||||||||||| ||||| ||||| |||| Sbjct 15 GCTCCTATAGTGTAGTGGTTATCACTTTGGACTTTGAATCCGGAAACCCAGGTTCGAATC 74 Query 145342 CAGGTAGGAGC 145352 | ||||||||| Sbjct 75 CTGGTAGGAGC 85 >seq8523 Length=6188 Score = 93.3 bits (102), Expect = 5e-14 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||||||| ||||||||||||||||||||| ||||| ||||| |||| Sbjct 15 GCTCCTATAGTGTAGTGGTTATCACTTTGGACTTTGAATCCGGAAACCCAGGTTCGAATC 74 Query 145342 CAGGTAGGAGC 145352 | ||||||||| Sbjct 75 CTGGTAGGAGC 85 >seq9867 Length=7937 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 729 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 670 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 669 CAGGTAGGAG 660 >seq3866 Length=19741 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 7362 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 7421 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 7422 CAGGTAGGAG 7431 >seq2676 Length=752 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 151 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 210 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 211 CAGGTAGGAG 220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627953032826400