Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11] 10,059 sequences; 49,951,730 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq9960 95.1 1e-14 seq9923 93.3 4e-14 seq5028 86.0 5e-12 >seq9960 Length=1600 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 26983 ACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAAC 27042 || |||||||||| || || || || |||||||| ||| | || | || || || || Sbjct 484 ACACCATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACGATCGCCCTCGAGGTCGAGG 543 Query 27043 CGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCG 27102 || |||| | || |||| || || || || || ||||| || ||||| || || | Sbjct 544 CGAGCGACACCATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGG 603 Query 27103 ATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATT 27162 |||| ||||| | || | ||| ||||| || |||| || | || | | || | Sbjct 604 ATCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACT 663 Query 27163 ACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||| || ||||||||||| | || | || |||| |||| |||||||| Sbjct 664 ACAACATCCAGAAGGAGTCGACGCTGCACCTTGTGCTGCGCCTGCGCGGTGGCAT 718 >seq9923 Length=5125 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||||||| | ||| | || || || || | Sbjct 1446 CATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATTGCGCTGGAGGTCGAGGCCAG 1387 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| |||| |||| || || || ||||| ||||| || ||||| || || || || Sbjct 1386 CGACACGATCGAGAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCA 1327 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | || ||||| || |||| || | || | | || ||||| Sbjct 1326 GCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAA 1267 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| || ||||||||||| | || | || |||| |||| |||||| Sbjct 1266 CATCCAGAAGGAGTCGACGCTGCACCTTGTGCTGCGCCTGCGCGGTGGC 1218 >seq5028 Length=838 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 26983 ACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAAC 27042 || |||||||||| || || || || |||||||| ||| | || | || || || || Sbjct 612 ACACCATGCAGATCTTCGTGAAGACGCTGACCGGTAAGACGATCGCCCTCGAGGTCGAGG 671 Query 27043 CGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCG 27102 || |||| | || |||| || || || || || ||||| || ||||| || || | Sbjct 672 CGAGCGACACCATCGAGAACGTGAAGGCGAAGATNCAGGACAAGGAGGGCATCCCGCCGG 731 Query 27103 ATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATT 27162 | || ||||| | || | |||||||| || |||| || | || || | || | Sbjct 732 ACCAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTTGCGGACT 791 Query 27163 ACAACATTCAAAAGGAGTCGAC 27184 ||||||| || ||||||||||| Sbjct 792 ACAACATCCAGAAGGAGTCGAC 813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434863714447680