Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11] 10,059 sequences; 49,951,730 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq9639 190 2e-43 seq9638 190 2e-43 >seq9639 Length=11758 Score = 190 bits (210), Expect = 2e-43 Identities = 389/579 (67%), Gaps = 12/579 (2%) Strand=Plus/Plus Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282 || |||||||||||||| || || | |||| |||||| ||||||| || | ||||| Sbjct 7737 CCTCTGCTGACGACGAAGCGCGTTTTCTGGCGCGGCGTGTGCGAGGAGTTGATCTGGTTT 7796 Query 34283 GTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCT 34342 || | || | |||||| | | ||| || | || | | |||||||||| Sbjct 7797 CTGCGTGGTGAGACGAACGCGCAACTGCTGGCGGACAAGGACATTCACATCTGGGACGGC 7856 Query 34343 CACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTG 34402 |||| || || || || |||||| |||||| | | ||||| ||| | Sbjct 7857 AACGGCTCGCGCGAGTTCTTGGACAGCCGGGGGCTGACGGAGAATAAGGAGATGGACCTT 7916 Query 34403 GGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCG 34462 ||||| |||||||| ||||||||| | ||||| || |||||||| ||| || || Sbjct 7917 GGCCCTGTCTACGGTTTCCAGTGGCGTCACTTCGGTGCGGAGTACAAGGGCTTTGACGCC 7976 Query 34463 GACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAAC 34522 |||| || |||| | ||||||| | || | | |||| ||| | ||| |||| Sbjct 7977 AACTACGACGGCGAGGGCGTGGACCAGATCAAGCAAATTGTCGAGACCCTCAAGACGAAC 8036 Query 34523 CCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCG 34582 || | || | || | | | |||||||||||| | || | | |||||| Sbjct 8037 CCGAACGATCGCCGGCTGCTCTTCACGGCGTGGAACCCGTGCGCACTGCATAAGATGGCC 8096 Query 34583 CTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCG---------CGAATGGGGAGCTG 34633 |||||||| |||||| ||| |||| ||||||||| |||| |||| || Sbjct 8097 CTCCCCCCTTGCCACCTGCTCGGCCAGTTCTACGTCAACACGGACACGAA---GGAGTTG 8153 Query 34634 TCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCT 34693 |||||| ||| ||||| || ||| | |||||||| | |||||||||||||||||||| Sbjct 8154 TCCTGCATGCTGTATCAGCGCTCGTGTGACATGGGTCTCGGGGTGCCGTTCAACATTGCG 8213 Query 34694 AGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTG 34753 ||| | ||||| ||| | ||||||| | | ||| || ||| ||||||||| Sbjct 8214 TCGTACTCGCTGCTGACGATCTTGATCGCAAAGGCGACCGGGCTGCGTCCGGGGGAGCTG 8273 Query 34754 GTGCATACGTTGGGGGATGCGCATATCTACCTGAACCAC 34792 ||||| || | || || ||||| |||||| |||||| Sbjct 8274 GTGCACACCCTCGGTGACGCGCACGTCTACCGCAACCAC 8312 Score = 190 bits (210), Expect = 2e-43 Identities = 389/579 (67%), Gaps = 12/579 (2%) Strand=Plus/Minus Query 6553 GTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCC 6612 |||||| |||||| ||||| || || | || |||||||||||||| ||| || ||| Sbjct 8312 GTGGTTGCGGTAGACGTGCGCGTCACCGAGGGTGTGCACCAGCTCCCCCGGACGCAGCCC 8253 Query 6613 CACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCC 6672 | | ||||||| | ||| ||||| | ||| |||||||||||||||||||| Sbjct 8252 GGTCGCCTTTGCGATCAAGATCGTCAGCAGCGAGTACGACGCAATGTTGAACGGCACCCC 8193 Query 6673 TAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCG------- 6725 | |||||||| | ||| || ||||| ||| |||||||| |||| |||| Sbjct 8192 GAGACCCATGTCACACGAGCGCTGATACAGCATGCAGGACAACTCC---TTCGTGTCCGT 8136 Query 6726 --CGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTT 6783 ||||||||| |||| ||| |||||| |||||||| |||||| | | || | Sbjct 8135 GTTGACGTAGAACTGGCCGAGCAGGTGGCAAGGGGGGAGGGCCATCTTATGCAGTGCGCA 8076 Query 6784 CGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGAT 6843 |||||||||||| | | | || | || | |||||| ||| | ||| |||| Sbjct 8075 CGGGTTCCACGCCGTGAAGAGCAGCCGGCGATCGTTCGGGTTCGTCTTGAGGGTCTCGAC 8016 Query 6844 CACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTC 6903 | | || | ||||||| | |||| || |||| || || ||| ||||| Sbjct 8015 AATTTGCTTGATCTGGTCCACGCCCTCGCCGTCGTAGTTGGCGTCAAAGCCCTTGTACTC 7956 Query 6904 CGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGA 6963 ||| || ||||| | ||||||||| |||||||| ||||| | ||| ||||| Sbjct 7955 CGCACCGAAGTGACGCCACTGGAAACCGTAGACAGGGCCAAGGTCCATCTCCTTATTCTC 7896 Query 6964 TGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC 7023 | | |||||| |||||| || || || || |||| |||||||||| | | | Sbjct 7895 CGTCAGCCCCCGGCTGTCCAAGAACTCGCGCGAGCCGTTGCCGTCCCAGATGTGAATGTC 7836 Query 7024 CCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGAC 7083 | | || ||| | | |||||| | || | || ||||| | || ||||||| Sbjct 7835 CTTGTCCGCCAGCAGTTGCGCGTTCGTCTCACCACGCAGAAACCAGATCAACTCCTCGCA 7776 Query 7084 CACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGG 7122 |||||| |||| | || || |||||||||||||| || Sbjct 7775 CACGCCGCGCCAGAAAACGCGCTTCGTCGTCAGCAGAGG 7737 >seq9638 Length=11764 Score = 190 bits (210), Expect = 2e-43 Identities = 389/579 (67%), Gaps = 12/579 (2%) Strand=Plus/Plus Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282 || |||||||||||||| || || | |||| |||||| ||||||| || | ||||| Sbjct 7743 CCTCTGCTGACGACGAAGCGCGTTTTCTGGCGCGGCGTGTGCGAGGAGTTGATCTGGTTT 7802 Query 34283 GTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCT 34342 || | || | |||||| | | ||| || | || | | |||||||||| Sbjct 7803 CTGCGTGGTGAGACGAACGCGCAACTGCTGGCGGACAAGGACATTCACATCTGGGACGGC 7862 Query 34343 CACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTG 34402 |||| || || || || |||||| |||||| | | ||||| ||| | Sbjct 7863 AACGGCTCGCGCGAGTTCTTGGACAGCCGGGGGCTGACGGAGAATAAGGAGATGGACCTT 7922 Query 34403 GGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCG 34462 ||||| |||||||| ||||||||| | ||||| || |||||||| ||| || || Sbjct 7923 GGCCCTGTCTACGGTTTCCAGTGGCGTCACTTCGGTGCGGAGTACAAGGGCTTTGACGCC 7982 Query 34463 GACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAAC 34522 |||| || |||| | ||||||| | || | | |||| ||| | ||| |||| Sbjct 7983 AACTACGACGGCGAGGGCGTGGACCAGATCAAGCAAATTGTCGAGACCCTCAAGACGAAC 8042 Query 34523 CCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCG 34582 || | || | || | | | |||||||||||| | || | | |||||| Sbjct 8043 CCGAACGATCGCCGGCTGCTCTTCACGGCGTGGAACCCGTGCGCACTGCATAAGATGGCC 8102 Query 34583 CTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCG---------CGAATGGGGAGCTG 34633 |||||||| |||||| ||| |||| ||||||||| |||| |||| || Sbjct 8103 CTCCCCCCTTGCCACCTGCTCGGCCAGTTCTACGTCAACACGGACACGAA---GGAGTTG 8159 Query 34634 TCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCT 34693 |||||| ||| ||||| || ||| | |||||||| | |||||||||||||||||||| Sbjct 8160 TCCTGCATGCTGTATCAGCGCTCGTGTGACATGGGTCTCGGGGTGCCGTTCAACATTGCG 8219 Query 34694 AGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTG 34753 ||| | ||||| ||| | ||||||| | | ||| || ||| ||||||||| Sbjct 8220 TCGTACTCGCTGCTGACGATCTTGATCGCAAAGGCGACCGGGCTGCGTCCGGGGGAGCTG 8279 Query 34754 GTGCATACGTTGGGGGATGCGCATATCTACCTGAACCAC 34792 ||||| || | || || ||||| |||||| |||||| Sbjct 8280 GTGCACACCCTCGGTGACGCGCACGTCTACCGCAACCAC 8318 Score = 190 bits (210), Expect = 2e-43 Identities = 389/579 (67%), Gaps = 12/579 (2%) Strand=Plus/Minus Query 6553 GTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCC 6612 |||||| |||||| ||||| || || | || |||||||||||||| ||| || ||| Sbjct 8318 GTGGTTGCGGTAGACGTGCGCGTCACCGAGGGTGTGCACCAGCTCCCCCGGACGCAGCCC 8259 Query 6613 CACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCC 6672 | | ||||||| | ||| ||||| | ||| |||||||||||||||||||| Sbjct 8258 GGTCGCCTTTGCGATCAAGATCGTCAGCAGCGAGTACGACGCAATGTTGAACGGCACCCC 8199 Query 6673 TAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCG------- 6725 | |||||||| | ||| || ||||| ||| |||||||| |||| |||| Sbjct 8198 GAGACCCATGTCACACGAGCGCTGATACAGCATGCAGGACAACTCC---TTCGTGTCCGT 8142 Query 6726 --CGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTT 6783 ||||||||| |||| ||| |||||| |||||||| |||||| | | || | Sbjct 8141 GTTGACGTAGAACTGGCCGAGCAGGTGGCAAGGGGGGAGGGCCATCTTATGCAGTGCGCA 8082 Query 6784 CGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGAT 6843 |||||||||||| | | | || | || | |||||| ||| | ||| |||| Sbjct 8081 CGGGTTCCACGCCGTGAAGAGCAGCCGGCGATCGTTCGGGTTCGTCTTGAGGGTCTCGAC 8022 Query 6844 CACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTC 6903 | | || | ||||||| | |||| || |||| || || ||| ||||| Sbjct 8021 AATTTGCTTGATCTGGTCCACGCCCTCGCCGTCGTAGTTGGCGTCAAAGCCCTTGTACTC 7962 Query 6904 CGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGA 6963 ||| || ||||| | ||||||||| |||||||| ||||| | ||| ||||| Sbjct 7961 CGCACCGAAGTGACGCCACTGGAAACCGTAGACAGGGCCAAGGTCCATCTCCTTATTCTC 7902 Query 6964 TGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC 7023 | | |||||| |||||| || || || || |||| |||||||||| | | | Sbjct 7901 CGTCAGCCCCCGGCTGTCCAAGAACTCGCGCGAGCCGTTGCCGTCCCAGATGTGAATGTC 7842 Query 7024 CCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGAC 7083 | | || ||| | | |||||| | || | || ||||| | || ||||||| Sbjct 7841 CTTGTCCGCCAGCAGTTGCGCGTTCGTCTCACCACGCAGAAACCAGATCAACTCCTCGCA 7782 Query 7084 CACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGG 7122 |||||| |||| | || || |||||||||||||| || Sbjct 7781 CACGCCGCGCCAGAAAACGCGCTTCGTCGTCAGCAGAGG 7743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448206036606480