Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11] 10,059 sequences; 49,951,730 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq9960 168 2e-36 seq5028 159 8e-34 seq9923 143 6e-29 seq5244 95.1 3e-14 >seq9960 Length=1600 Score = 168 bits (186), Expect = 2e-36 Identities = 167/215 (78%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || || ||||| || |||||||| || ||||| || || | || || Sbjct 700 AGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCC 641 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| ||||| || || || || |||| || ||||||||| Sbjct 640 TCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGATCCGGCGGAATGCCCTCCTTGTCC 581 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| |||||||| ||||||||||| ||| || |||||||| | |||| Sbjct 580 TGGATCTTCGCCTTCACGTTCTCGATGGTGTC---GCTCGCCTCGACCTCGAGGGCGATC 524 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || ||||| || || | |||||| Sbjct 523 GTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 489 >seq5028 Length=838 Score = 159 bits (176), Expect = 8e-34 Identities = 165/215 (77%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || |||||||| || | || || Sbjct 828 AGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCC 769 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| ||||| || ||||| || || | || ||||||||| Sbjct 768 TCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 709 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 || ||||| |||||||| ||||||||||| ||| || |||||||| | |||| Sbjct 708 TGNATCTTCGCCTTCACGTTCTCGATGGTGTC---GCTCGCCTCGACCTCGAGGGCGATC 652 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || ||||| || || | |||||| Sbjct 651 GTCTTACCGGTCAGCGTCTTCACGAAGATCTGCAT 617 >seq9923 Length=5125 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || || ||||| || |||||||| || ||||| || || | || || Sbjct 1234 AGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCC 1293 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| ||||| || ||||| || || | || ||||||||| Sbjct 1294 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 1353 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| |||||||| ||||| ||||| | || ||||| || | || ||| Sbjct 1354 TGAATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCGACCTCCAGCGCAATGGTC 1413 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 1414 TTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1445 >seq5244 Length=1098 Score = 95.1 bits (104), Expect = 3e-14 Identities = 104/137 (76%), Gaps = 6/137 (4%) Strand=Plus/Minus Query 210981 AAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACG 211040 ||||| ||||| || ||||| || || | || ||||||||||| ||||| |||||| Sbjct 929 AAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACG 870 Query 211041 TTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || ||||||||||| ||| || |||||||| | ||||||||| || || || ||| Sbjct 869 TTCTCGATGGTGTC---GCTCGCCTCGACCTCGAGGGCGATCGTCTTACCGGTCAGGGTC 813 Query 211098 TTTACAAACACCTGCAT 211114 || || || | |||||| Sbjct 812 TTCACGAAGATCTGCAT 796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159002607403535