Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11] 10,059 sequences; 49,951,730 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq9639 113 4e-20 seq9638 113 4e-20 seq7593 107 2e-18 seq6102 107 2e-18 >seq9639 Length=11758 Score = 113 bits (124), Expect = 4e-20 Identities = 180/256 (70%), Gaps = 12/256 (5%) Strand=Plus/Minus Query 29628 CCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCA 29687 ||| ||| ||||| | |||||| |||||||||| |||||||||| || || || | Sbjct 8343 CCCGCTCCAGCTGCTGCTTCAGCGCATCCACGTGGTTGCGGTAGACGTGCGCGTCACCGA 8284 Query 29688 GGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGA 29747 ||||||| || | ||| ||||| |||||||| | | || |||| | ||| || | Sbjct 8283 GGGTGTGCACCAGCTCCCCCGGACGCAGCCCGGTCGCCTTTGCGATCAAGATCGTCAGCA 8224 Query 29748 GAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGA 29807 | ||||| || ||||| || ||||||||||| |||||||| | || | ||| || | Sbjct 8223 GCGAGTACGACGCAATGTTGAACGGCACCCCGAGACCCATGTCACACGAGCGCTGATACA 8164 Query 29808 GCTGGCACGAGAGCTC-------TCCGTCGCTCACGTAAAACTGACACATGGCA--TGGC 29858 || ||| || | ||| ||||| | | ||||| ||||| | | ||| |||| Sbjct 8163 GCATGCAGGACAACTCCTTCGTGTCCGT-GTTGACGTAGAACTGGCCGA--GCAGGTGGC 8107 Query 29859 ACGGAGGAAGGGCCAT 29874 | || || |||||||| Sbjct 8106 AAGGGGGGAGGGCCAT 8091 >seq9638 Length=11764 Score = 113 bits (124), Expect = 4e-20 Identities = 180/256 (70%), Gaps = 12/256 (5%) Strand=Plus/Minus Query 29628 CCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCA 29687 ||| ||| ||||| | |||||| |||||||||| |||||||||| || || || | Sbjct 8349 CCCGCTCCAGCTGCTGCTTCAGCGCATCCACGTGGTTGCGGTAGACGTGCGCGTCACCGA 8290 Query 29688 GGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGA 29747 ||||||| || | ||| ||||| |||||||| | | || |||| | ||| || | Sbjct 8289 GGGTGTGCACCAGCTCCCCCGGACGCAGCCCGGTCGCCTTTGCGATCAAGATCGTCAGCA 8230 Query 29748 GAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGA 29807 | ||||| || ||||| || ||||||||||| |||||||| | || | ||| || | Sbjct 8229 GCGAGTACGACGCAATGTTGAACGGCACCCCGAGACCCATGTCACACGAGCGCTGATACA 8170 Query 29808 GCTGGCACGAGAGCTC-------TCCGTCGCTCACGTAAAACTGACACATGGCA--TGGC 29858 || ||| || | ||| ||||| | | ||||| ||||| | | ||| |||| Sbjct 8169 GCATGCAGGACAACTCCTTCGTGTCCGT-GTTGACGTAGAACTGGCCGA--GCAGGTGGC 8113 Query 29859 ACGGAGGAAGGGCCAT 29874 | || || |||||||| Sbjct 8112 AAGGGGGGAGGGCCAT 8097 >seq7593 Length=7721 Score = 107 bits (118), Expect = 2e-18 Identities = 114/146 (78%), Gaps = 6/146 (4%) Strand=Plus/Minus Query 53531 ATGGGCGACAAGTT-TGCATCCTTCACGGCGCAAAAGGGGACATGCGGAG--CGGTCCTG 53587 || || |||||||| |||| || ||||| ||| ||||| || ||| | || | | Sbjct 3386 ATCGGTGACAAGTTCTGCAGCCGGCACGG-GCAGAAGGGCACGAACGGTATTCAGTTCCG 3328 Query 53588 ACTCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCC 53647 ||||||||||||||||||| | ||||| |||||||||||||||||||||||||| Sbjct 3327 --TCAGGAGGACATGCCCTTCAATCGTGACGGCGTGGTGCCCGACCTCATCATCAACCCG 3270 Query 53648 CACGCCTTTCCCTCCAGGATGACGGT 53673 |||||| |||| ||| | |||||||| Sbjct 3269 CACGCCATTCCTTCCCGTATGACGGT 3244 >seq6102 Length=7716 Score = 107 bits (118), Expect = 2e-18 Identities = 114/146 (78%), Gaps = 6/146 (4%) Strand=Plus/Plus Query 53531 ATGGGCGACAAGTT-TGCATCCTTCACGGCGCAAAAGGGGACATGCGGAG--CGGTCCTG 53587 || || |||||||| |||| || ||||| ||| ||||| || ||| | || | | Sbjct 4331 ATCGGTGACAAGTTCTGCAGCCGGCACGG-GCAGAAGGGCACGAACGGTATTCAGTTCCG 4389 Query 53588 ACTCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCC 53647 ||||||||||||||||||| | ||||| |||||||||||||||||||||||||| Sbjct 4390 --TCAGGAGGACATGCCCTTCAATCGTGACGGCGTGGTGCCCGACCTCATCATCAACCCG 4447 Query 53648 CACGCCTTTCCCTCCAGGATGACGGT 53673 |||||| |||| ||| | |||||||| Sbjct 4448 CACGCCATTCCTTCCCGTATGACGGT 4473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406113406803274