Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11] 10,059 sequences; 49,951,730 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq5028 183 6e-41 seq9960 179 8e-40 seq9923 161 2e-34 seq5244 107 4e-18 seq9046 102 2e-16 seq9045 102 2e-16 seq8644 102 2e-16 seq2805 102 2e-16 seq1924 102 2e-16 seq5564 84.2 5e-11 >seq5028 Length=838 Score = 183 bits (202), Expect = 6e-41 Identities = 173/221 (78%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 282879 CGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTG 282938 |||||||| || || || || | ||| || || |||||||||||||| ||||||||| Sbjct 837 CGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTG 778 Query 282939 CGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCC 282998 ||||| ||||| || || || ||||||||||||| || || ||||| ||| || ||| Sbjct 777 CGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCC 718 Query 282999 TCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGA 283058 |||||||| || ||||| || || ||| | ||||| ||||| || ||||| ||||| Sbjct 717 TCCTTGTCCTGNATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGG 658 Query 283059 GTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | |||||||||||| |||| ||||| ||||| |||||||| Sbjct 657 GCGATCGTCTTACCGGTCAGCGTCTTCACGAAGATCTGCAT 617 >seq9960 Length=1600 Score = 179 bits (198), Expect = 8e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || || || || | ||| || || |||||||||||||| || Sbjct 715 CCACCGCGCAGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 656 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || || || ||||||| || || || || |||| Sbjct 655 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGATCCGGCGGA 596 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| ||||| || ||||| Sbjct 595 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACC 536 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| | |||||||||||| |||| ||||| ||||| |||||||| Sbjct 535 TCGAGGGCGATCGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 489 >seq9923 Length=5125 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || || || || | ||| || || |||||||||||||| || Sbjct 1219 CCACCGCGCAGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 1278 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || || |||||||||| || || ||||| ||| Sbjct 1279 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 1338 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || ||||| || || ||| | ||||| ||||| || ||||| Sbjct 1339 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCGACC 1398 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || | || ||||| || |||| ||||| ||||| |||||||| Sbjct 1399 TCCAGCGCAATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1445 >seq5244 Length=1098 Score = 107 bits (118), Expect = 4e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 282966 AAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACG 283025 ||||||| || || ||||| ||| || ||||||||||| || ||||| || || ||| Sbjct 929 AAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACG 870 Query 283026 GTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTA 283085 | ||||| ||||| || ||||| ||||| | |||||||||||| |||| ||||| Sbjct 869 TTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCGTCTTACCGGTCAGGGTCTTC 810 Query 283086 ACGAATATCTGCAT 283099 ||||| |||||||| Sbjct 809 ACGAAGATCTGCAT 796 >seq9046 Length=27123 Score = 102 bits (112), Expect = 2e-16 Identities = 195/280 (70%), Gaps = 8/280 (3%) Strand=Plus/Minus Query 273774 AGTTTCGTGAAAATGTA-CCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACC 273832 ||||||||||| ||||| | ||| | || ||||| || ||| ||| | | ||| || Sbjct 25614 AGTTTCGTGAAGATGTAGCGCGGCGC-GGCGTGGTCGTTACCAAGCTGCTGACGCGAGCC 25556 Query 273833 AAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAA--TCCTGAGCC 273890 ||||| ||||| || | ||| || |||||||||| ||| ||||| | ||| ||| Sbjct 25555 GAACTGGCCCTCCGGGACGAGCAGATTGATGTTGTTGCCACC--CGTAAAGTTCTGCGCC 25498 Query 273891 ATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCG 273950 || |||||||| ||| |||| || || |||| |||||||| ||||| | |||| | Sbjct 25497 ATCTTCACGATGGTCTCCTGCAGCGACGCCTCTCCGTGGTGGAAGGCGGAGACCTCGGAG 25438 Query 273951 ATATAACCACTGAACTGAGCAACCTTCACATCGCTCG-TCAAGTTTCGCTTGAATGCGGA 274009 || || || || ||| || |||||| | | |||| | || ||||| | | Sbjct 25437 ATGTAGCCGGAGAGCTGCGCCACCTTCGC-TGCCTCGCTGCTGTGCCGCTTCAGCATCGC 25379 Query 274010 ATACAACACCTTCCGCTGCGAGGGCTTGAACCCATCAACG 274049 |||| | || |||||||||||||||| || || ||| Sbjct 25378 CCACAAAATTTTACGCTGCGAGGGCTTGAGGCCGTCGACG 25339 >seq9045 Length=27112 Score = 102 bits (112), Expect = 2e-16 Identities = 195/280 (70%), Gaps = 8/280 (3%) Strand=Plus/Minus Query 273774 AGTTTCGTGAAAATGTA-CCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACC 273832 ||||||||||| ||||| | ||| | || ||||| || ||| ||| | | ||| || Sbjct 25603 AGTTTCGTGAAGATGTAGCGCGGCGC-GGCGTGGTCGTTACCAAGCTGCTGACGCGAGCC 25545 Query 273833 AAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAA--TCCTGAGCC 273890 ||||| ||||| || | ||| || |||||||||| ||| ||||| | ||| ||| Sbjct 25544 GAACTGGCCCTCCGGGACGAGCAGATTGATGTTGTTGCCACC--CGTAAAGTTCTGCGCC 25487 Query 273891 ATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCG 273950 || |||||||| ||| |||| || || |||| |||||||| ||||| | |||| | Sbjct 25486 ATCTTCACGATGGTCTCCTGCAGCGACGCCTCTCCGTGGTGGAAGGCGGAGACCTCGGAG 25427 Query 273951 ATATAACCACTGAACTGAGCAACCTTCACATCGCTCG-TCAAGTTTCGCTTGAATGCGGA 274009 || || || || ||| || |||||| | | |||| | || ||||| | | Sbjct 25426 ATGTAGCCGGAGAGCTGCGCCACCTTCGC-TGCCTCGCTGCTGTGCCGCTTCAGCATCGC 25368 Query 274010 ATACAACACCTTCCGCTGCGAGGGCTTGAACCCATCAACG 274049 |||| | || |||||||||||||||| || || ||| Sbjct 25367 CCACAAAATTTTACGCTGCGAGGGCTTGAGGCCGTCGACG 25328 >seq8644 Length=13955 Score = 102 bits (112), Expect = 2e-16 Identities = 238/346 (69%), Gaps = 20/346 (6%) Strand=Plus/Minus Query 273779 CGTGAAAATGTACCTGGCACTCG-CATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACT 273837 |||||| ||||| | | | | || | |||||||| || || ||||||| || |||||||| Sbjct 2944 CGTGAAGATGTAAC-GACCCGCGGCGTGGTCCTTTCCGCCCTGCAGCCGCGTACCAAACT 2886 Query 273838 GACCCTC---GGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATAT 273894 |||| || | |||| || | ||||||||||| ||||| | || || ||||| Sbjct 2885 GACCGTCCTTGCGCAGGAGAGGG---ATGTTGTTGCTGCCGACAAAGTCTTGTGCCATGC 2829 Query 273895 TCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATAT 273954 ||| || ||| | || || |||||||||||| |||||| ||| || | || | Sbjct 2828 CCACAATCGTCTGCACCAGCGACTGCTCGCCGTGGTGGTAGGCGGAGTGCTCCGAGACGT 2769 Query 273955 AACCACTGAACTGAGCAACCTTCACATCGC-TCGTC-AAGTTTCGCTTGAATGCGGAATA 274012 |||| | ||| | ||||| ||||| | | | | ||| |||||||| |||| | Sbjct 2768 AACCGGACAGCTGGACTACCTT--GATCGCGTTGACGAGGTTGCGCTTGAAGCAGGAAAA 2711 Query 274013 CAACACCTTCCGCTGCGAGGGCTTGAACCCATCAA-CGACCGAT-GGAATACTGCGTTCC 274070 | | ||| |||||| |||||||| || |||| || || | || || ||||| || Sbjct 2710 GAGAATCTTGCGCTGCCCAGGCTTGAAGCCGTCAATCG--CGCTCGGGATGCTGCGCTCG 2653 Query 274071 AAATCATACCGA--GAGAACAAAATCAGTTCCTTGTCAATGAAGTC 274114 | || ||| ||||| | |||||| ||||| || | ||||| Sbjct 2652 CAGTC--TGCGATGGAGAAGAGAATCAGCTCCTTATCCACAAAGTC 2609 >seq2805 Length=13962 Score = 102 bits (112), Expect = 2e-16 Identities = 238/346 (69%), Gaps = 20/346 (6%) Strand=Plus/Plus Query 273779 CGTGAAAATGTACCTGGCACTCG-CATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACT 273837 |||||| ||||| | | | | || | |||||||| || || ||||||| || |||||||| Sbjct 11019 CGTGAAGATGTAAC-GACCCGCGGCGTGGTCCTTTCCGCCCTGCAGCCGCGTACCAAACT 11077 Query 273838 GACCCTC---GGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATAT 273894 |||| || | |||| || | ||||||||||| ||||| | || || ||||| Sbjct 11078 GACCGTCCTTGCGCAGGAGAGGG---ATGTTGTTGCTGCCGACAAAGTCTTGTGCCATGC 11134 Query 273895 TCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATAT 273954 ||| || ||| | || || |||||||||||| |||||| ||| || | || | Sbjct 11135 CCACAATCGTCTGCACCAGCGACTGCTCGCCGTGGTGGTAGGCGGAGTGCTCCGAGACGT 11194 Query 273955 AACCACTGAACTGAGCAACCTTCACATCGC-TCGTC-AAGTTTCGCTTGAATGCGGAATA 274012 |||| | ||| | ||||| ||||| | | | | ||| |||||||| |||| | Sbjct 11195 AACCGGACAGCTGGACTACCTT--GATCGCGTTGACGAGGTTGCGCTTGAAGCAGGAAAA 11252 Query 274013 CAACACCTTCCGCTGCGAGGGCTTGAACCCATCAA-CGACCGAT-GGAATACTGCGTTCC 274070 | | ||| |||||| |||||||| || |||| || || | || || ||||| || Sbjct 11253 GAGAATCTTGCGCTGCCCAGGCTTGAAGCCGTCAATCG--CGCTCGGGATGCTGCGCTCG 11310 Query 274071 AAATCATACCGA--GAGAACAAAATCAGTTCCTTGTCAATGAAGTC 274114 | || ||| ||||| | |||||| ||||| || | ||||| Sbjct 11311 CAGTC--TGCGATGGAGAAGAGAATCAGCTCCTTATCCACAAAGTC 11354 >seq1924 Length=25061 Score = 102 bits (112), Expect = 2e-16 Identities = 195/280 (70%), Gaps = 8/280 (3%) Strand=Plus/Plus Query 273774 AGTTTCGTGAAAATGTA-CCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACC 273832 ||||||||||| ||||| | ||| | || ||||| || ||| ||| | | ||| || Sbjct 2561 AGTTTCGTGAAGATGTAGCGCGGCGC-GGCGTGGTCGTTACCAAGCTGCTGACGCGAGCC 2619 Query 273833 AAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAA--TCCTGAGCC 273890 ||||| ||||| || | ||| || |||||||||| ||| ||||| | ||| ||| Sbjct 2620 GAACTGGCCCTCCGGGACGAGCAGATTGATGTTGTTGCCACC--CGTAAAGTTCTGCGCC 2677 Query 273891 ATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCG 273950 || |||||||| ||| |||| || || |||| |||||||| ||||| | |||| | Sbjct 2678 ATCTTCACGATGGTCTCCTGCAGCGACGCCTCTCCGTGGTGGAAGGCGGAGACCTCGGAG 2737 Query 273951 ATATAACCACTGAACTGAGCAACCTTCACATCGCTCG-TCAAGTTTCGCTTGAATGCGGA 274009 || || || || ||| || |||||| | | |||| | || ||||| | | Sbjct 2738 ATGTAGCCGGAGAGCTGCGCCACCTTCGC-TGCCTCGCTGCTGTGCCGCTTCAGCATCGC 2796 Query 274010 ATACAACACCTTCCGCTGCGAGGGCTTGAACCCATCAACG 274049 |||| | || |||||||||||||||| || || ||| Sbjct 2797 CCACAAAATTTTACGCTGCGAGGGCTTGAGGCCGTCGACG 2836 >seq5564 Length=1640 Score = 84.2 bits (92), Expect = 5e-11 Identities = 143/206 (69%), Gaps = 1/206 (0%) Strand=Plus/Plus Query 230199 ATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGGCAATAT 230258 || |||||||| | || || || ||||||||||| || || || ||| ||| || Sbjct 1 ATCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAACGCGGAGCTGATGTCGCAGTAC 60 Query 230259 ATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCC 230318 ||||| ||||| || || || | | ||| |||| ||| ||||| || ||| Sbjct 61 ATCGAGTTCGTTGCGGACCGGCTGCTGGTGTCGCTGGGGCTGGAGAAGCACTACAACGTG 120 Query 230319 AAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAA 230378 | | | ||||||| || |||||| | || || || ||||| || || ||||||||||| Sbjct 121 ACGCAGCCCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAG 180 Query 230379 AAGCGTGTCAGCGATTATCA-AAGGC 230403 ||| || |||| || || ||||| Sbjct 181 AAGAAGGTTGGCGAGTACCAGAAGGC 206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046604295270586