Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11] 10,059 sequences; 49,951,730 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq9923 152 4e-32 seq9960 149 5e-31 seq5028 143 2e-29 seq5244 84.2 2e-11 >seq9923 Length=5125 Score = 152 bits (168), Expect = 4e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||| ||||| ||||| |||||| ||||||||||| || ||| Sbjct 1219 CCACCGCGCAGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 1278 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| || |||||||||| |||||||| || | || Sbjct 1279 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 1338 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| |||||| |||| | |||| | || |||||| || || || Sbjct 1339 ATGCCCTCCTTGTCCTGAATCTTCGCCTTC-ACGTTCTCGATCGTGTCGCTGGCCTCGAC 1397 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 ||||| || ||| ||||| || || || |||||||||||||| |||||||| Sbjct 1398 CTCCAGCGCAATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGAT 1448 >seq9960 Length=1600 Score = 149 bits (164), Expect = 5e-31 Identities = 176/236 (75%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || || | ||| | || ||| ||||| ||||| |||||| ||||||||||| || Sbjct 718 ATGCCACCGCGCAGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCC 659 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 ||||| ||| | || ||||||||||| || || ||||||| ||||||||||| | Sbjct 658 GCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGATCCGGC 599 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| |||||| ||||| |||| | ||||||||| | || Sbjct 598 GGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCAC-GTTCTCGATGGTGTCGCTCGCCTC 540 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGT 44342 ||||| | | |||||||| || || ||||||||||||||||| |||||| ||| Sbjct 539 GACCTCGAGGGCGATCGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCATGGTGT 484 >seq5028 Length=838 Score = 143 bits (158), Expect = 2e-29 Identities = 168/225 (75%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 44119 CAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCG 44178 ||| | || ||| ||||| ||||| |||||| ||||||||||| || || || ||| Sbjct 835 CAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCG 776 Query 44179 CTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTC 44238 | || ||||||||||| ||||||||||||| |||||||| || | || | || || Sbjct 775 GCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTC 716 Query 44239 CTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCG 44297 ||| ||| |||||| ||||| |||| | ||||||||| | || ||||| | | Sbjct 715 CTTGTCCTGNATCTTCGCCTTCAC-GTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGG 657 Query 44298 TAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGT 44342 |||||||| || || || |||||||||||||| |||||| ||| Sbjct 656 CGATCGTCTTACCGGTCAGCGTCTTCACGAAGATCTGCATGGTGT 612 >seq5244 Length=1098 Score = 84.2 bits (92), Expect = 2e-11 Identities = 104/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 44204 AAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAAT 44263 ||||||| |||||||| || | || | || ||||| ||| |||||| ||||| Sbjct 929 AAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCAC- 871 Query 44264 GTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTT 44322 |||| | ||||||||| | || ||||| | | |||||||| || || |||||||| Sbjct 870 GTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCGTCTTACCGGTCAGGGTCTT 811 Query 44323 CACGAAGATTTGCATGATGT 44342 ||||||||| |||||| ||| Sbjct 810 CACGAAGATCTGCATGGTGT 791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359946267314403