Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11] 10,059 sequences; 49,951,730 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq5028 145 2e-29 seq9960 134 3e-26 seq9923 123 6e-23 seq5244 107 5e-18 >seq5028 Length=838 Score = 145 bits (160), Expect = 2e-29 Identities = 158/209 (76%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || |||||||| || || || || || |||||| |||||||||| || ||| Sbjct 620 CAGATCTTCGTGAAGACGCTGACCGGTAAGACGATCGCCCTCGAGGTCGAGGCGAGC--- 676 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||||||||| || ||||| |||||||| || || ||||| ||||||||| Sbjct 677 GACACCATCGAGAACGTGAAGGCGAAGATNCAGGACAAGGAGGGCATCCCGCCGGACCAG 736 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || ||||| ||||| || ||||| || || || | || ||||| || || ||| Sbjct 737 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTTGCGGACTACAAC 796 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 797 ATCCAGAAGGAGTCGACGCTGCACCTCGT 825 >seq9960 Length=1600 Score = 134 bits (148), Expect = 3e-26 Identities = 156/209 (75%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || |||||||| || || || || || |||||| |||||||||| || ||| Sbjct 492 CAGATCTTCGTGAAGACCCTGACCGGTAAGACGATCGCCCTCGAGGTCGAGGCGAGC--- 548 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||||||||| || ||||| |||||||| || || || || ||||| ||| Sbjct 549 GACACCATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGATCAG 608 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || |||||||| || || ||||| || || || | || || || || || ||| Sbjct 609 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 668 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| ||||| Sbjct 669 ATCCAGAAGGAGTCGACGCTGCACCTTGT 697 >seq9923 Length=5125 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || || | || ||||| || | ||| Sbjct 1442 CAGATCTTCGTGAAGACGCTGACCGGCAAGACCATTGCGCTGGAGGTCGAGGCCAGCGAC 1383 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || |||||||||||||| || || ||||| ||||||||||| Sbjct 1382 ACGATCGAGAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCAGCAG 1323 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| || || || | || || || || || ||| || Sbjct 1322 CGCCTGATCTTTGCTGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAACATC 1263 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| ||||| Sbjct 1262 CAGAAGGAGTCGACGCTGCACCTTGT 1237 >seq5244 Length=1098 Score = 107 bits (118), Expect = 5e-18 Identities = 105/134 (78%), Gaps = 6/134 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || |||||||| || || || || || |||||| |||||||||| || ||| Sbjct 799 CAGATCTTCGTGAAGACCCTGACCGGTAAGACGATCGCCCTCGAGGTCGAGGCGAGC--- 855 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||||||||| || |||||||||||||| || || ||||| ||||||||| Sbjct 856 GACACCATCGAGAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCAG 915 Query 178041 CAACGACTTATCTT 178054 || || || ||||| Sbjct 916 CAGCGCCTGATCTT 929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203576061994446