Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20mellificae_20[genbank_20GCA_5F002216565.1_202017-07-11] 10,059 sequences; 49,951,730 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq9960 165 8e-36 seq9923 161 9e-35 seq5028 156 4e-33 seq5244 89.7 5e-13 >seq9960 Length=1600 Score = 165 bits (182), Expect = 8e-36 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | ||| || |||||||| ||||||||| ||||| ||||| | Sbjct 716 GCCACCGCGCAGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 657 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| | || || ||||||||||| ||||| ||||||||||| || |||| || Sbjct 656 GAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGATCCGGCGG 597 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || || |||||||||| ||| || ||||| | | |||||||||| ||| || Sbjct 596 AATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGAC 537 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | | ||||| ||||| ||||| ||||| ||||| ||||||||| Sbjct 536 CTCGAGGGCGATCGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCATG 488 >seq9923 Length=5125 Score = 161 bits (178), Expect = 9e-35 Identities = 179/235 (76%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | ||| || |||||||| ||||||||| ||||| ||||| | Sbjct 1218 GCCACCGCGCAGGCGCAGCACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 1277 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| | || || ||||||||||| || || ||||||||||| ||||||| || Sbjct 1278 GAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGG 1337 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| | || | ||||| | | |||||||| | ||| | Sbjct 1338 GATGCCCTCCTTGTCC-TGAATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCGA 1396 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG-TTAT 41867 |||||| || || || || || ||||||||||| ||||| ||||||||| |||| Sbjct 1397 CCTCCAGCGCAATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGATTAT 1451 >seq5028 Length=838 Score = 156 bits (172), Expect = 4e-33 Identities = 168/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 41641 GCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGT 41700 ||| || || | ||| || |||||||| ||||||||| ||||| ||||| | || || Sbjct 838 GCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGT 779 Query 41701 GCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCT 41760 ||| | || || |||||||||||||| || ||||||||||| ||||||| || | || Sbjct 778 GCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCC 719 Query 41761 CTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCAC 41820 |||||||||| || || ||||| | | |||||||||| ||| ||||| | Sbjct 718 CTCCTTGTCCTGNATCTTCGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCGAG 659 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | ||||| ||||| ||||||||||| ||||| ||||||||| Sbjct 658 GGCGATCGTCTTACCGGTCAGCGTCTTCACGAAGATCTGCATG 616 >seq5244 Length=1098 Score = 89.7 bits (98), Expect = 5e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 41729 AATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTG-CTTCAA 41787 || ||||||||||| ||||||| || | || |||||||||| ||| | || | ||||| Sbjct 929 AAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC-TGAATCTTCGCCTTCAC 871 Query 41788 CGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTT 41847 | | |||||||||| ||| ||||| | | ||||| ||||| ||||| ||||| Sbjct 870 GTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCGTCTTACCGGTCAGGGTCTT 811 Query 41848 TACGAAAATCTGCATG 41863 ||||| ||||||||| Sbjct 810 CACGAAGATCTGCATG 795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462245871050800