Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq26061 116 4e-21 seq5074 114 2e-20 >seq26061 Length=1673 Score = 116 bits (128), Expect = 4e-21 Identities = 247/364 (68%), Gaps = 10/364 (3%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| |||||||| | |||||||||| || | ||||| | ||||| || Sbjct 979 CAGGCGAAGTCGCAGTGCATGCCCTCGTCTCGGGAGATGTACTCGTTCGTGAACGTCAGC 920 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 24253 || ||||| || || ||||| || ||||| || || || ||| || || || || ||||| Sbjct 919 CCCGGCATCAGCCCCCGCTTCTTCAGCCAGAAGATCGA-GCAGAACGACCCGGAGAAGAA 861 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC----CGGCGCTGTCAT 24309 || || || || || || || || | || || || | ||| ||| |||| | Sbjct 860 GATGCCCTCCACCGCTGCGAACGCGACGAGCCTCTCCGCG-AACGTGGCGGAGCTGCCG- 803 Query 24310 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 24369 |||||||| ||||| ||||||||||| | || || |||| ||| || || | Sbjct 802 --ATCCACTTGATGGCCCACTCGGCCTTCTTCGTGACGCACGGCACCGTCGAGATCGCCT 745 Query 24370 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 24429 | || || || |||||| | | || | || || || || | ||||| ||| Sbjct 744 TGAACAGCGTGTCTTTTTCGGCGTTGTTCTTGATGTACGTGTCGATGAGCAGACTGTACG 685 Query 24430 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAA 24489 | || ||||| |||||||| || || || || || |||||||| || | ||||||| | Sbjct 684 TCTCGGAATGGATGTTTTCGATCGCGATCTGGAACCCGTAGAAGCACCGGGCCTCGGGGA 625 Query 24490 TCTG 24493 |||| Sbjct 624 TCTG 621 >seq5074 Length=2057 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 53143 ATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGG 53202 |||||||||| |||||||||| || |||||||| ||| || | |||| ||||| || Sbjct 1553 ATTAACTACTGGAAATTCTCCCGATAATACTCTACGAAGATATACATTAGAAGTATAAGG 1494 Query 53203 TTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 53262 ||| | | | || |||||||||| || || ||| ||||| || ||||| ||||| | Sbjct 1493 TTCGAAACATTCGTTATTTCCCAGGATAATAGAAGTAGATGCTGTGGGCATTGGTGCGAT 1434 Query 53263 CAATAAACTATTTCTAAGACCGTATGTTCTGATTTTAT 53300 ||||||||||||| |||| || | | | |||||| || Sbjct 1433 CAATAAACTATTTTTAAGTCCATGTTTCTTGATTTCAT 1396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593429095632240