Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq26061 358 7e-94 seq29849 127 2e-24 seq34640 120 3e-22 seq2393 109 6e-19 seq21875 100 3e-16 >seq26061 Length=1673 Score = 358 bits (396), Expect = 7e-94 Identities = 599/862 (69%), Gaps = 8/862 (1%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||| |||||||| | ||| ||| | |||||||| || |||||||| Sbjct 369 GAGCCGCTGCTGAAGGAGAACCCGTACAGGTACGTCTTGTTCCCCATCCAGCACCCGGAC 428 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| || ||||| || |||||||| ||||| ||||| |||||| Sbjct 429 ATCTGGCAGATGTACAAGGCCGCGGAGGCCTCATTCTGGACGGTCGAAGAGGTTGACCTG 488 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 | ||| || ||||||||| || | |||||| ||||| || ||||||| ||| Sbjct 489 GCGGCCGACCTGAAGGACTGGGAGGGCCTCAACGACGGGGAGCGACACTTCATCACCCAC 548 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 || || || || |||||||| ||||||||||||| |||||| || | ||| ||| Sbjct 549 GTCCTCGCGTTCTTCGCCGCTTCCGACGGCATCGTCCTCGAGAACCTCGCTTCGCGGTTC 608 Query 116816 GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAG 116875 | || | ||| | ||||||| |||||||||||||| || |||||||| || || Sbjct 609 ATGAACGACATCCAGATCCCCGAGGCCCGGTGCTTCTACGGGTTCCAGATCGCGATCGAA 668 Query 116876 AACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT-GCGCTCTTCGGAGGA 116934 ||| | || || || | ||| ||||||||||||||| | | | || | | Sbjct 669 AACATCCATTCCGAGACGTACAGTCTGCTCATCGACACGTACATCAAGAACAACGCCGAA 728 Query 116935 GAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTG 116994 ||| || |||| || || ||| |||| |||||||||||| ||||||||||||| Sbjct 729 AAAGACACG-CTGTTCAAGGCGATCTCGACGGTGCCGTGCGTCACGAAGAAGGCCGAGTG 787 Query 116995 GGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGC 117054 ||| | ||||| |||||| ||| | |||| ||| | || || || ||||| Sbjct 788 GGCCATCAAGTGGAT---CGGCAGCTCCGCCACGTTCGCGGAGAGGCTCGTCGCGTTCGC 844 Query 117055 GGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACG 117114 || || |||||| ||||||| || || ||| | | || || ||||| ||||| || Sbjct 845 AGCGGTGGAGGGCATCTTCTTCTCCGGGTCGTTCTGCTCGATCTTCTGGCTGAAGAAGCG 904 Query 117115 CGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCA 117174 || || ||||| || ||||| |||| |||||| ||||||| | |||||||| |||| Sbjct 905 GGGGCTGATGCCGGGGCTGACGTTCACGAACGAGTACATCTCCCGAGACGAGGGCATGCA 964 Query 117175 TTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCA---GCGACCGAGCGCGGCGCG 117231 |||||||| ||||| |||| | ||| | | | | | || | ||| || ||| Sbjct 965 CTGCGACTTCGCCTGCCTGCTCTACAACAAGCTCGAGTACACACGCCTCAGCAGGGAGCG 1024 Query 117232 CGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCT 117291 || ||| | | | || || || ||||||||| || || | || || || || Sbjct 1025 TGTGGTGGAATTGCTTGCGGAGGCTGTAGCCATCGAGAAGGAGTTTGTAACGGACGCACT 1084 Query 117292 GCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGC 117351 |||||| ||| | || | || |||| |||| || | |||||||||||||| Sbjct 1085 GCCGGTCAAGCTGATCGGGATGAACAGCGACCTGATGGCGAAGTACATCGAGTTCGTGTG 1144 Query 117352 CGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGA 117411 |||| | ||| | | || | | || ||| ||||||||||| | |||||| | || Sbjct 1145 CGACCGACTGTTCGTGACTCTCGGCTACGAGAAGTACTACAACACGGCGAACCCGTTCGA 1204 Query 117412 CTTTATGAACCTCATCTCCTTG 117433 ||| ||| | ||||||||| || Sbjct 1205 CTTCATGGAGCTCATCTCCCTG 1226 >seq29849 Length=3363 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| || || || || || || ||||| || ||||| |||| ||||| || Sbjct 1275 AAAATGCAAATTTTTGTGAAGACACTGACCGGCAAGACGATCACTCTCGAAGTCGAGTCC 1216 Query 40747 ACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||||| | || |||| | ||| || || | ||||| || |||||||| | || Sbjct 1215 AACGACACGATTGAGAACG-TGAAGTCGAAGATCCAGGACAAGGAAGGCATCCCGCCTGA 1157 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| ||| | |||| ||| || || || || || |||| |||||||| |||||| Sbjct 1156 CCAGCAGCGATTGATCTTCGCAGGAAAGCAACTCGAGGACGGTCGCACCCTTGCCGACTA 1097 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||| || |||||| | || || || || ||| |||| Sbjct 1096 CAACATTCAAAAGGAGTCGACCCTCCACCTTGTGCTGCG 1058 >seq34640 Length=3269 Score = 120 bits (132), Expect = 3e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || |||||||| || ||||| |||| ||||| | Sbjct 1345 AAGATGCAGATCTTCGTTAAGACCCTGACGGGCAAGACAATCACGCTCGAGGTCGAGTCG 1286 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | | ||| || || | ||||| ||||||||||| | ||| Sbjct 1285 AATGACACCATCGAGAATGTGAAGTCGAAGATCCAGGACAAGGAGGGCATCCCGCCTGAC 1226 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || | |||| ||| || || |||||||| |||| | || || |||||| Sbjct 1225 CAGCAGCGGTTGATCTTCGCCGGGAAGCAGCTGGAGGACGGCAGGACGCTTGCGGACTAC 1166 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 ||||||||||||||| | |||||||| || ||| | || || | || || ||| Sbjct 1165 AACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTGCGTGGTGGAGGC 1112 >seq2393 Length=4323 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || ||||| || || ||||| || |||||| | || || || | | Sbjct 1124 AATGCAGATCTTTGTGAAAACTCTTACTGGCAAGACTATCACCCTTGAGGTGGAGTCGAA 1065 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | ||| | ||| || |||| ||||| ||||| ||||| ||||||| Sbjct 1064 TGATACCATCGAAAATGTGAAGTCGAAGATTCAGGACAAGGAGGGGATCCCGCCGGACCA 1005 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||||||||||| || ||||| ||| | || || | | || || |||||||| Sbjct 1004 GCAACGACTCATCTTTGCAGGCAAGCAGTTAGAAGATGGCAGGACTCTGGCTGACTACAA 945 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | || || || || || | ||| || | || || Sbjct 944 CATCCAGAAGGAGTCTACCCTTCACCTGGTTCTCCGCCTGCGCGGAGG 897 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||| ||||| || ||||| || || ||||| ||||| || || || | || || || Sbjct 2160 GAAAGATGCAGATCTTCGTTAAGACTCTCACAGGCAAGACTATTACTCTTGAGGTGGAGT 2101 Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | | || | | | ||| | ||| || |||| ||||| ||||| ||||| ||| Sbjct 2100 CGAATGATACCATCGAAAATGTGAAGTCGAAGATTCAGGACAAGGAGGGGATCCCGCCGG 2041 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 |||||||||||||||||| || ||||| ||| | || || | | || || |||| Sbjct 2040 ACCAGCAACGACTCATCTTTGCAGGCAAGCAGTTAGAAGATGGCAGGACTCTGGCTGACT 1981 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||||||| | || || || || || | ||| || | || || Sbjct 1980 ACAACATCCAGAAGGAGTCTACCCTTCACCTGGTTCTCCGCCTGCGCGGAGG 1929 >seq21875 Length=4161 Score = 100 bits (110), Expect = 3e-16 Identities = 178/258 (69%), Gaps = 4/258 (2%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || || || || || |||||| | || || || | Sbjct 446 AAGATGCAGATTTTCGTGAAGACCCTGACCGGGAAGACGATCACCCTTGAGGTGGAGTCA 387 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | ||||| | | | | ||| || || | ||||| || || ||||| | ||| Sbjct 386 AACGACACGATCGAGAATGTGAAGTCTAAGATCCAGGACAAGGAAGGGATCCCGCCCGAC 327 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| |||| |||| ||| || || ||||| || |||| | || || ||||||| Sbjct 326 CAGCAGAGACTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACGCTGGCCGACTAC 267 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGCTTGCAT 40926 ||||||||||||||| |||| || || || || ||| | | | || |||| | || || Sbjct 266 AACATCCAGAAGGAGTCCACCCTCCACCTGGTCTTGAGACTCCGTGGTGGCGTCATG-AT 208 Query 40927 GAA---CTCGCTGCGGGT 40941 | | |||||||| ||| Sbjct 207 GGAGCCCTCGCTGCAGGT 190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514965370820880