Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_002166.1 Length=40751 Score E Sequences producing significant alignments: (Bits) Value seq8567 154 4e-33 seq8566 80.6 7e-11 >seq8567 Length=29384 Score = 154 bits (170), Expect = 4e-33 Identities = 338/495 (68%), Gaps = 16/495 (3%) Strand=Plus/Minus Query 11886 GGATGAATGCAACGGAACGCTGACGGCCTGCAAACTTCGGTTCGGTGAAAACAACGAACT 11945 |||| ||||||| || ||| || ||||||| | || ||||| || | ||||||||| Sbjct 1793 GGATCAATGCAAAGGCTGTCTGTCGTCCTGCAAGTTGCGATTCGGCGAGAGCAACGAACT 1734 Query 11946 CTCGTTTGGTGGGTTCCCGGGTACGTCGCTGAT---CAGGAGTTGAT-ATGCGTCAGAAA 12001 || || || || ||||| | ||| || || |||||| ||| ||||| || | Sbjct 1733 TTCCTTCGGCGGATTCCCCGCCGTGTCCCTCATTGCCAGGAGCTGACCATGCGCAAGCAC 1674 Query 12002 ACCATCGATGCGATTATGGCGCATGCTGCAGCTGAATATCCTCGTGAGTGCTGCGG--TG 12059 | || | ||||| ||||||||| ||||| || ||||| ||||||||||| || Sbjct 1673 ATAATTGCGGCGATCCAGGCGCATGCGGCAGCGGAGTATCCGAAAGAGTGCTGCGGGCTG 1614 Query 12060 -TGGTGGCACAGAAGAGCCGGGTAGAGAAATATTTTCCATGTCGTAACCTCGCTACCGAG 12118 || ||| | | || | |||| |||| || || ||||| || ||| |||| || ||| Sbjct 1613 CTGCTGG--CTGTAG-GGCGGGCGCAGAAGTACTTCCCATGCCGGAACATCGCCACGGAG 1557 Query 12119 CCGACAGAACATTTTCACCTGTCGCCAGAAGACTATGCAGCTGCTGAGGACTGGGGTACG 12178 |||| ||| | |||| || || || ||||| || || || |||||| ||| | Sbjct 1556 CCGAACGAAGAGTTTCGACTTGATCCTGAGGACTACGCTGCAGCGGAGGACCTGGGCGAG 1497 Query 12179 GTGATCGCCATCGTTCACAGTCACCCTGACGCCACAACGCAGCCG--AGCGAACTGGATA 12236 ||||||| ||| || ||| ||||| |||||||| | | |||| | || || || Sbjct 1496 GTGATCGGCATTGTCCACTCGCACCCGGACGCCACCAGCCGGCCGTCACCGCAC--GACT 1439 Query 12237 AAGCGCAATGCGACGCAACGCTTTTACCCTGGCATATTGTGAGCTGGCCGGATGGGGATT 12296 || || || | ||| || |||||||| ||| || ||||| || ||||||| Sbjct 1438 TGGCCATGTGTGAGGTCACGGCCTTGCCCTGGCACATTCTGTCGTGGCCCGAGGGGGATT 1379 Query 12297 TACGCACCATCCAGCC-GCGCGGAGAACTGCCACTGCTGGAGCGTCCGTTTGTGCTTGGA 12355 | || || ||| ||| || | | || ||||||||| |||| |||||||| | ||| Sbjct 1378 TGCGGACGATCACGCCAACGGGCCGCAC-GCCACTGCTCAAGCGCCCGTTTGTACATGGC 1320 Query 12356 CACTTCGACTGCTGG 12370 || ||||| ||| Sbjct 1319 GCCTGGGACTGTTGG 1305 >seq8566 Length=6269 Score = 80.6 bits (88), Expect = 7e-11 Identities = 288/449 (64%), Gaps = 1/449 (0%) Strand=Plus/Minus Query 15429 AGCG-CGATACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAGTCAG 15487 |||| || || ||| ||||| |||||| || | |||||||| |||||| | |||| | Sbjct 3125 AGCGTCGCTATGGCGACAATCCGCTGGAGATCAGTGCCATCGGTTGCACCCGCGAGTCGG 3066 Query 15488 AAGCGAACCGAAAGGGGCGCTGGGGCATTCTCACCAACAACAAGGATCGCGTTGTTTCGT 15547 | || | || || |||| | || || ||| |||||| | | ||| | | Sbjct 3065 AGGCTCAGCGCCGCGGCAAGTGGGCGCTGCTGACAAACTCCAAGGACAGGGCTGTCACAT 3006 Query 15548 TTGATGTCGGGCTGGACGGAAACATTCCGCAGCCTGGCTACATCATCGCCGTGGCAGACG 15607 | | ||||| || || || ||| |||| ||||| ||| | ||| | | || |||| Sbjct 3005 TCAAGGTCGGCCTTGATGGGCGCATCCCGCTCCCTGGATACGTGATCCCAATCGCGGACG 2946 Query 15608 AGCTGCTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGCGTTATCA 15667 ||||||| | || | ||||||| |||||| || || ||||| || |||| Sbjct 2945 AGCTGCTGGCGGGCCGGCCGGTGGGCGGGCGCATCTCTGCGGTGAACGGCAAAGTCATCA 2886 Query 15668 AACTTGACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTCAACCTTCCCTCCG 15727 || ||||||| | | || || ||||| ||||| || |||||||| || || Sbjct 2885 CCCTGGACCGCGATACCCAGGCGAAGCCCGGTGACCGCCTGATCCTCAACCTGCCTGACG 2826 Query 15728 GAGCGTCGCAGAGCAGGACCATTCAGGCCGTGAACGGGGAATCAGTCACAGTCACCACGG 15787 || || || || | ||| | || || | ||| ||||| |||||||||| Sbjct 2825 GAAAGTGCGAGGGCCGCACCGTGCAACTGGTCAGCGGCCGCCAGGTCACGGTCACCACGG 2766 Query 15788 CATACAGTGAGACGCCACAGGCCGAAGCTGTTTGGGTGGTTGAATCTGACGAGCTCTACG 15847 | ||| | | |||| || ||| || |||| | | || ||||||| || | Sbjct 2765 CGTACTCCGTGGCGCCTGAGCGTGAACTGGTGTGGGCGCTCGACGCTGACGACCTGGCCA 2706 Query 15848 CGCAGCAGTATCGAGTTGTCAGCGTTTCC 15876 | || |||||| || |||||||||| Sbjct 2705 TCCCGCTGTATCGGGTGACCAGCGTTTCC 2677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130220624384178