Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_002167.1 Length=39732 Score E Sequences producing significant alignments: (Bits) Value seq8567 147 6e-31 seq8566 86.0 2e-12 >seq8567 Length=29384 Score = 147 bits (162), Expect = 6e-31 Identities = 335/494 (68%), Gaps = 14/494 (3%) Strand=Plus/Minus Query 12698 GGATGAATGCAATGGCACGCTGACGGCCTGCAAACTCCGATTCGGCGAAAATAACGAACT 12757 |||| ||||||| ||| ||| || ||||||| | ||||||||||| | |||||||| Sbjct 1793 GGATCAATGCAAAGGCTGTCTGTCGTCCTGCAAGTTGCGATTCGGCGAGAGCAACGAACT 1734 Query 12758 CTCGTTTGGTGGCTTCCCGGGCACGTCTTTGAT---CAGGAGTTGA-TATGCGTCAGAAA 12813 || || || || ||||| | | ||| | || |||||| ||| ||||| || | Sbjct 1733 TTCCTTCGGCGGATTCCCCGCCGTGTCCCTCATTGCCAGGAGCTGACCATGCGCAAGCAC 1674 Query 12814 ACCATAGATGCGATTATGGCGCATGCTGCAGCTGAATATCCTCTTGAGTGTTGCGGCGTG 12873 | || | ||||| ||||||||| ||||| || ||||| ||||| ||||| || Sbjct 1673 ATAATTGCGGCGATCCAGGCGCATGCGGCAGCGGAGTATCCGAAAGAGTGCTGCGGGCTG 1614 Query 12874 GTG-GCGCAGAAAAGC-CGCGTTGAACGTTATTTCCCGTGCCGGAATCTTGCCGCGGCGC 12931 || || | | || ||| ||| || ||||| |||||||| | ||| ||| || Sbjct 1613 CTGCTGGCTGTAGGGCGGGCGCAGAA--GTACTTCCCATGCCGGAACATCGCCACGGAGC 1556 Query 12932 CGGAGGACAATTTTGTCCTTTGCCCCGAAGACTACGCAGCTGCTGAGGACTGGGGAACGG 12991 || | || | ||| ||| || || |||||||| || || |||||| ||| || Sbjct 1555 CGAACGAAGAGTTTCGACTTGATCCTGAGGACTACGCTGCAGCGGAGGACCTGGGCGAGG 1496 Query 12992 TGATCGCCATCGTTCACAGTCACCCTGACGCCACTACGCAGCCG--AGCGAACTGGATAA 13049 |||||| ||| || ||| ||||| |||||||| | | |||| | || || || Sbjct 1495 TGATCGGCATTGTCCACTCGCACCCGGACGCCACCAGCCGGCCGTCACCGCAC--GACTT 1438 Query 13050 AGCGCAATGCGACGCAACGCTTTTACCCTGGCATATTGTGAGCTGGCCGGAGGGGGATTT 13109 || || || | ||| || |||||||| ||| || ||||| ||||||||||| Sbjct 1437 GGCCATGTGTGAGGTCACGGCCTTGCCCTGGCACATTCTGTCGTGGCCCGAGGGGGATTT 1378 Query 13110 ACGCACCATCCAGCC-GCGCGGAGAACTGCCGCTGCTGGAGCGTCCGTTTGTGCTTGGAC 13168 || || ||| ||| || | | || ||| ||||| |||| |||||||| | ||| Sbjct 1377 GCGGACGATCACGCCAACGGGCCGCAC-GCCACTGCTCAAGCGCCCGTTTGTACATGGCG 1319 Query 13169 ACTTCGACTGCTGG 13182 || ||||| ||| Sbjct 1318 CCTGGGACTGTTGG 1305 >seq8566 Length=6269 Score = 86.0 bits (94), Expect = 2e-12 Identities = 526/837 (63%), Gaps = 30/837 (4%) Strand=Plus/Minus Query 16059 GATAAATGGACGCTTTATCAGGTTGCTCAGTATTGTGATCAGATGGTACCAGACGGCAAA 16118 || || ||| |||||||| | | ||||| || || ||| |||| || ||||| || Sbjct 3498 GACAAGTGGGAGCTTTATCGCATCTCGCAGTACTGCGACCAGTTGGTGCCGGACGGTAAG 3439 Query 16119 GGGGGCAACGGTACAGAACCACGTTATACCTGCAACGTGTACATTCAGGACCGGAACGAC 16178 || ||| | | | || || | | ||||||| || || | ||| | | |||| Sbjct 3438 GGCGGCCAGG------AGCCGCGCTTCATCTGCAACCTGAACCTACAGAGCAAGGCCGAC 3385 Query 16179 GCCTACACAGTCCTGCGTGATTTTGCCGCTATCTTCCGTGGCATGACCTACTGGGGCGGG 16238 |||| | | |||||||| | | || |||| ||| || ||||||||||||| | Sbjct 3384 GCCTGGTCGTTGCTGCGTGACATCTCGGCGATCTACCGGGGGATGACCTACTGGGCCCAA 3325 Query 16239 GATCAGATTGTGGCCCTGGCTGACATGCCGCGCG------ATGTTGATTACAGCTATACG 16292 | ||| | | ||||| | || |||||||||| | |||| | | |||||| Sbjct 3324 GGCCAGGTGTTCACCCTGTCGGATATGCCGCGCGCCACCGACTTTGACTTCGCCTATACC 3265 Query 16293 CGCGCTAACGTTGTTGGCGGTCGCTTCACCTATTCGAGCAGCACCACGAAAAGC---CGC 16349 || || ||||| | | || ||||||||||| |||| | || | || || Sbjct 3264 CGGGCAAACGTCATCGATGGCAAGTTCACCTATTC---CAGCGCGTCGGAGCGCACCCGG 3208 Query 16350 TACACCACAGCGCTGGTTTCATG-GTCAGACCCGGGTAACGCTTATGCCGACGC-GATGG 16407 |||||| || ||| | | | || |||| ||| ||| |||| | || | Sbjct 3207 TACACCCGCGCACTGATCAGCTACGACA-ACCCACTGAACAATTA---CGACACTGACGT 3152 Query 16408 AAC--CGGTATTTGAG--CAGGCGCTGGTGGCGCGGTACGGCTTCAATCAGCTGGAAATG 16463 || |||| ||| || || | | ||| || ||| ||||| |||||| || Sbjct 3151 CACTGCGGTTACTGATGCCAAGCTTCAGCGTCGC--TATGGCGACAATCCGCTGGAGATC 3094 Query 16464 ACAGCCATCGGCTGCACCAGGCAGTCAGAGGCGAACCGAAAGGGGCGCTGGGGTATTCTC 16523 | |||||||| |||||| | |||| ||||| | || || |||| | || Sbjct 3093 AGTGCCATCGGTTGCACCCGCGAGTCGGAGGCTCAGCGCCGCGGCAAGTGGGCGCTGCTG 3034 Query 16524 ACCAATAACAAGGATCGCGTTGTTTCGTTTGATGTCGGGCTGGACGGAAACATTCCGCAG 16583 || || |||||| | | ||| | || | ||||| || || || ||| |||| Sbjct 3033 ACAAACTCCAAGGACAGGGCTGTCACATTCAAGGTCGGCCTTGATGGGCGCATCCCGCTC 2974 Query 16584 CCGGGCTACATCATCGCCGTGGCAGACGAGCTGCTTTCCGGAAAGGTTATGGGCGGCCGC 16643 || || ||| | ||| | | || ||||||||||| | || | ||||||| ||| Sbjct 2973 CCTGGATACGTGATCCCAATCGCGGACGAGCTGCTGGCGGGCCGGCCGGTGGGCGGGCGC 2914 Query 16644 ATCAGCGCCGTTAACGGTCGCGTTATCAAACTTGACCGCGTAGCTGATGCAGCACCAGGT 16703 ||| || || ||||| || |||| || ||||||| | | || || ||| Sbjct 2913 ATCTCTGCGGTGAACGGCAAAGTCATCACCCTGGACCGCGATACCCAGGCGAAGCCCGGT 2854 Query 16704 GATCGCCTTATTCTCAACCTGCCTTCCGGAGCGTCGCAGAGCAGGACCATTCAGGCCGTG 16763 || ||||| || |||||||||||| |||| || || || | ||| | || || Sbjct 2853 GACCGCCTGATCCTCAACCTGCCTGACGGAAAGTGCGAGGGCCGCACCGTGCAACTGGTC 2794 Query 16764 AACGGGGAATCAGTCACAGTCACCACGGCATACAGTGAGACGCCACAGGCCGAAGCTGTT 16823 | ||| ||||| ||||||||||| ||| | | |||| || ||| || Sbjct 2793 AGCGGCCGCCAGGTCACGGTCACCACGGCGTACTCCGTGGCGCCTGAGCGTGAACTGGTG 2734 Query 16824 TGGGTGGTTGAATCTGACGAGCTTTACGCGCAGCAGTATCGTGTTGTCAGCGTTTCC 16880 |||| | | || ||||||| || | | || |||||| || |||||||||| Sbjct 2733 TGGGCGCTCGACGCTGACGACCTGGCCATCCCGCTGTATCGGGTGACCAGCGTTTCC 2677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126961350534364