Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq29849 120 3e-22 seq21875 116 3e-21 seq2393 105 6e-18 seq34640 96.9 3e-15 seq34427 84.2 2e-11 >seq29849 Length=3363 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || | | || || ||| | ||||| || ||||| |||||||||||||| ||| Sbjct 1044 TACCACCTCTGAGTCGCAGCACAAGGTGGAGGGTCGACTCCTTTTGAATGTTGTAGTCGG 1103 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| |||||||| || ||||| ||| |||| | |||||||| || || | Sbjct 1104 CAAGGGTGCGACCGTCCTCGAGTTGCTTTCCTGCGAAGATCAATCGCTGCTGGTCAGGCG 1163 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||| |||||||| || || || || | || | ||||| || ||||| Sbjct 1164 GGATGCCTTCCTTGTCCTGGATCTTCGACTTCACGTTCTCAATCGTGTCGTTGGACTCGA 1223 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | |||| || | ||| ||||||||||| || || |||||||| ||||| Sbjct 1224 CTTCGAGAGTGATCGTCTTGCCGGTCAGTGTCTTCACAAAAATTTGCAT 1272 >seq21875 Length=4161 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || || | |||||| |||| ||||| || ||||| || || |||||||| ||| | Sbjct 217 CCACCACGGAGTCTCAAGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 276 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || | ||||||||||| ||||| ||| |||| || | |||||| ||||| || Sbjct 277 AGCGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCGGGCGGG 336 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || |||||||| || || || || | |||| ||||| | ||| ||| Sbjct 337 ATCCCTTCCTTGTCCTGGATCTTAGACTTCACATTCTCGATCGTGTCGTTTGACTCCACC 396 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | ||| || |||||||| || || || ||||||||||| Sbjct 397 TCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 443 >seq2393 Length=4323 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||||||||| | | | |||| ||| | |||||||| || || |||||||| || Sbjct 896 ACCTCCGCGCAGGCGGAGAACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGC 955 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| | ||| || | ||| || || || ||||||| || ||||| || || || Sbjct 956 CAGAGTCCTGCCATCTTCTAACTGCTTGCCTGCAAAGATGAGTCGTTGCTGGTCCGGCGG 1015 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || ||||||||||| ||| || || || | ||||| ||| || | ||| || Sbjct 1016 GATCCCCTCCTTGTCCTGAATCTTCGACTTCACATTTTCGATGGTATCATTCGACTCCAC 1075 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | ||| | || ||||| || |||||||| ||||| |||||||| Sbjct 1076 CTCAAGGGTGATAGTCTTGCCAGTAAGAGTTTTCACAAAGATCTGCAT 1123 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||||||||| | | | |||| ||| | |||||||| || || |||||||| || Sbjct 1928 ACCTCCGCGCAGGCGGAGAACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGC 1987 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| | ||| || | ||| || || || ||||||| || ||||| || || || Sbjct 1988 CAGAGTCCTGCCATCTTCTAACTGCTTGCCTGCAAAGATGAGTCGTTGCTGGTCCGGCGG 2047 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || ||||||||||| ||| || || || | ||||| ||| || | ||| || Sbjct 2048 GATCCCCTCCTTGTCCTGAATCTTCGACTTCACATTTTCGATGGTATCATTCGACTCCAC 2107 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | || | || ||||| || ||||| || || || |||||||| Sbjct 2108 CTCAAGAGTAATAGTCTTGCCTGTGAGAGTCTTAACGAAGATCTGCAT 2155 >seq34640 Length=3269 Score = 96.9 bits (106), Expect = 3e-15 Identities = 159/224 (71%), Gaps = 9/224 (4%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-GCT--CATAGTGCGCGTATC 118585 ||||| ||| | || ||||| || || |||||||| || || | | ||| ||| | Sbjct 1133 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTCCTGC-CGT--C 1189 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || || ||| |||| | |||||||| || || || |||||||||||||| Sbjct 1190 CTCCAGCTGCTTCCCGGCGAAGATCAACCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTC 1249 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | |||| |||||| | ||||||||||| || | || Sbjct 1250 CTGGATCTTCGACTTCACATTCTCGATGGTGTCATTCGACTCGACCTCGAGCGTGATTGT 1309 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCA---TGGCTTATT 118746 ||||| ||||| || || || || ||||||| ||||||||| Sbjct 1310 CTTGCCCGTCAGGGTCTTAACGAAGATCTGCATCTTGGCTTATT 1353 >seq34427 Length=4033 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/120 (76%), Gaps = 3/120 (3%) Strand=Plus/Minus Query 134204 GTTGCGTCTCAAGTTGAGAAACTCATAAATTTCCGGATGCCACGGCTCGATGTAGGCGGC 134263 |||||| | | || ||| ||||| | || |||| ||||||||||||| |||| ||| Sbjct 3726 GTTGCGCTTGAGGTGGAGGAACTCGAAGATGTCCGCGTGCCACGGCTCGAGGTAGATGGC 3667 Query 134264 GAGGGCACCTTTTCGCTT---ACCACCCTGGTCGACGTGACGCACCATGTTGTTGAAGAC 134320 || || ||| |||||||| || || |||||||||| |||| || ||| |||||| || Sbjct 3666 GAAGGAACCCTTTCGCTTGCCTCCGCCTTGGTCGACGTAACGCGCCGTGTCGTTGAACAC 3607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433622011329796