Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq29849 127 2e-24 seq34640 120 3e-22 seq2393 109 6e-19 seq21875 105 8e-18 >seq29849 Length=3363 Score = 127 bits (140), Expect = 2e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||||||||| ||||| || || || || || |||| || || ||||| || ||||| Sbjct 1081 CTCCTTTTGAATGTTGTAGTCGGCAAGGGTGCGACCGTCCTCGAGTTGCTTTCCTGCGAA 1140 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | |||||||||||| | ||| | || ||||||||| ||| || || | | Sbjct 1141 GATCAATCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATCTTCGACTTCACGTT 1200 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||||| | || || || |||| ||||| || ||||| || || ||||| || Sbjct 1201 CTCAATCGTGTCGTTGGACTCGACTTCGAGAGTGATCGTCTTGCCGGTCAGTGTCTTCAC 1260 Query 43172 AAAGATTTGCATTTT 43186 ||| ||||||||||| Sbjct 1261 AAAAATTTGCATTTT 1275 >seq34640 Length=3269 Score = 120 bits (132), Expect = 3e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||| |||| || |||||| || || ||||| || || || |||| | Sbjct 1127 ACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTCCTGCC 1186 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || ||||| || | ||||||||||| | ||| | || |||||| Sbjct 1187 GTCCTCCAGCTGCTTCCCGGCGAAGATCAACCGCTGCTGGTCAGGCGGGATGCCCTCCTT 1246 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || || | || | | ||||| |||| || || |||| |||||| Sbjct 1247 GTCCTGGATCTTCGACTTCACATTCTCGATGGTGTCATTCGACTCGACCTCGAGCGTGAT 1306 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || |||||||| || ||||| || ||||| ||||| || Sbjct 1307 TGTCTTGCCCGTCAGGGTCTTAACGAAGATCTGCATCTT 1345 >seq2393 Length=4323 Score = 109 bits (120), Expect = 6e-19 Identities = 142/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| ||||||||||||| | || |||| |||||| || || || Sbjct 932 CTCCTTCTGGATGTTGTAGTCAGCCAGAGTCCTGCCATCTTCTAACTGCTTGCCTGCAAA 991 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 |||||||| |||||||| | ||| | | |||||||||| ||| | || | || | Sbjct 992 GATGAGTCGTTGCTGGTCCGGCGGGATCCCCTCCTTGTCC-TGAATCTTCGACTTCACAT 1050 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || || |||| ||||| || | ||||| || ||||| || || || || | Sbjct 1051 TTTCGATGGTATCATTCGACTCCACCTCAAGGGTGATAGTCTTGCCAGTAAGAGTTTTCA 1110 Query 43171 CAAAGATTTGCATT 43184 ||||||| |||||| Sbjct 1111 CAAAGATCTGCATT 1124 Score = 105 bits (116), Expect = 8e-18 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| ||||||||||||| | || |||| |||||| || || || Sbjct 1964 CTCCTTCTGGATGTTGTAGTCAGCCAGAGTCCTGCCATCTTCTAACTGCTTGCCTGCAAA 2023 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 |||||||| |||||||| | ||| | | |||||||||| ||| | || | || | Sbjct 2024 GATGAGTCGTTGCTGGTCCGGCGGGATCCCCTCCTTGTCC-TGAATCTTCGACTTCACAT 2082 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || || |||| ||||| || | || || || ||||| || || ||||| | Sbjct 2083 TTTCGATGGTATCATTCGACTCCACCTCAAGAGTAATAGTCTTGCCTGTGAGAGTCTTAA 2142 Query 43171 CAAAGATTTGCATTTTT 43187 | ||||| ||||| ||| Sbjct 2143 CGAAGATCTGCATCTTT 2159 >seq21875 Length=4161 Score = 105 bits (116), Expect = 8e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 ||| |||| || | ||| |||||| || || ||||| || ||||| || | |||| Sbjct 231 CAAGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTTCTGCCGTC 290 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || |||||||| || ||||| || |||| ||||||||||| ||| | | |||||||| Sbjct 291 CTCGAGCTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCGGGCGGGATCCCTTCCTTGTC 350 Query 43091 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 43150 | ||| || || | || | | ||||||| | || ||||| || | ||||| || Sbjct 351 CTGGATCTTAGACTTCACATTCTCGATCGTGTCGTTTGACTCCACCTCAAGGGTGATCGT 410 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || || || || ||||| || || || ||||| || Sbjct 411 CTTCCCGGTCAGGGTCTTCACGAAAATCTGCATCTT 446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571535886911640