Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_002484.2 Length=56426 Score E Sequences producing significant alignments: (Bits) Value seq8567 147 8e-31 seq32405 87.8 6e-13 seq8869 84.2 8e-12 >seq8567 Length=29384 Score = 147 bits (162), Expect = 8e-31 Identities = 270/405 (67%), Gaps = 0/405 (0%) Strand=Plus/Minus Query 45922 GATTTTCCCTGCTCAAGGTTGGAAATTGAGGTCTGATCCAGGCCGACTCTCTGAGCTAGT 45981 |||||||| ||||||||| ||||| || ||||| | ||| || | || | | Sbjct 25309 GATTTTCCACGCTCAAGGTCAGAAATCGACGTCTGCGTGATACCGGCTTTAGCGGCCAAT 25250 Query 45982 TGAGCCTGGGTTAGTTTGGCGTGCTTACGCGCGGCCTTGATGCGATCTTTGAGTTCCATC 46041 | |||| | || ||||||||| ||||| ||||| | |||||||||| ||||||| Sbjct 25249 TCGCCCTGATTGAGCTTGGCGTGCCGGCGCGCTGCCTTTAAACGATCTTTGAATTCCATC 25190 Query 46042 CGAAAATTATCATGGGCACTCCCATGTCCTTGCAAATGAGTATTNNNNNNNNNNNNNNNN 46101 || | ||| | ||| ||||||| ||||||||||| ||||| Sbjct 25189 CGGCGAGTATTACGGGTGCTCCCATATCCTTGCAAATCGGTATTCCCATAACTTAATATA 25130 Query 46102 NNNNNNNNNNNATAAGGAGGGATGCTATGACCACCATCTACAAAGAGCTCGTCGCCCATT 46161 || |||||| |||| ||| || || || || ||||| ||| | Sbjct 25129 TGGGTATTCCCGTATGGAGGGGCAGCATGAACACTATTTATAAGGACCTCGTTGCCTTCT 25070 Query 46162 TCGGGACTCAAGACGAGACCGCCGCGAAGCTCGGCGTTGACCAAAGCACTGTGTCTGGAT 46221 |||| ||||| || | || |||| |||||| ||||| |||||||| || || || | Sbjct 25069 TCGGCACTCAGGAGGTCACGGCCGAAAAGCTCAAGGTTGATCAAAGCACCGTTTCCGGTT 25010 Query 46222 GGGTCCGGGGAAAGCACGGGATGTCTCCTGTTGTTGCGAAGCGGGCTCAGGTTCTGACCG 46281 |||| || | |||||||| |||||||| || ||||| ||||| || ||| |||||| Sbjct 25009 GGGTTCGCGAGAAGCACGGCATGTCTCCAGTGGTTGCCAAGCGAGCGGAGGCGTTGACCG 24950 Query 46282 ACGGGAAATTCAAGAAAGAGGACCTGTGTCCGGCTTTCCCGTGGG 46326 || ||||| ||||| ||| |||||| | || || |||| Sbjct 24949 GAGGTGCTTTCAAAAAAGAATCCCTTTGTCCGTCGTTTCCCTGGG 24905 >seq32405 Length=7639 Score = 87.8 bits (96), Expect = 6e-13 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 48923 TGGCCAGGGAGATCGGATGCCCGGTGCTCCCGCTCTGCCAGCTCAACCGCGGATGTGAGT 48982 |||||| ||| || ||||||||| | | || | ||||||||||| |||| Sbjct 2992 TGGCCAAGGAATTCAACTGCCCGGTGGTTGCCCTGTCGCAGCTCAACCGATCTCTTGAGC 2933 Query 48983 CTCGCCCGGATAAGCGCCCGGTGCTCAGCGACCTACGCGAGTCCGGCGCCATCGAGCAAG 49042 || ||| | || |||||| | | |||| | || || ||||| || |||||||| | Sbjct 2932 AGCGTCCGAACAAACGCCCGATCAACTCCGACTTGCGGGAATCCGGAGCGATCGAGCAGG 2873 Query 49043 ACGCGGACATCGTGATGTTCGTGTACCGCGATGAAGTCTATTTCCCGAACAGCGATAAGA 49102 | || ||| | | |||||||| ||||| || || || ||| |||| | | ||| | | Sbjct 2872 ATGCTGACGTGATCATGTTCGTATACCGGGACGAGGTGTATCACCCGGAGACCGAGCATA 2813 Query 49103 AGGGCATCGGCGAAATCCTGATCCGGAAGAATCGGGACGGAGAAATCGGCA 49153 | ||||||| |||||| | ||| | || | || |||| |||||||| Sbjct 2812 AAGGCATCGCTGAAATCATTATCGGTAAACAGCGTAACGGGCCAATCGGCA 2762 >seq8869 Length=13117 Score = 84.2 bits (92), Expect = 8e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 27036 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 27094 || ||||||||||||||||||||||||| || ||||||||||||||| | ||||||||| Sbjct 12963 ACTGGATTTAGGTTCCAGCGCCGCAAGGTGTAAGAGTTCGAGTCTCTTCATCCGCACCA 13021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180357148030728