Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq4352 100 6e-16 seq19698 86.0 1e-11 >seq4352 Length=4274 Score = 100 bits (110), Expect = 6e-16 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 254205 CCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCC 254264 ||||| | |||| || | ||||| ||||| |||||| | || | | ||||||||| | Sbjct 498 CCGCCGTACAAGATCATTATCCTCGACGAAGCGGACGCGCTGCTGCCGGACGCGCAGGCG 557 Query 254265 GCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAAC 254324 ||||| || || | || || |||| | | |||||||| || |||||| | |||||| Sbjct 558 GCCCTGCGGCGGATCATCGAAGAGCACGCGGCGGTGACGCGGTTCTGCCTGATCTGCAAC 617 Query 254325 TACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 ||||||||| ||||||| || |||| || || |||| ||| | || |||| Sbjct 618 TACGTGTCGCGCATCATCGAGCCCCTGGTGTCCCGCTGCGTGAAGATGCGGTTCA 672 >seq19698 Length=2970 Score = 86.0 bits (94), Expect = 1e-11 Identities = 108/148 (73%), Gaps = 3/148 (2%) Strand=Plus/Minus Query 254021 CGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAACCCTGTTGGG 254080 ||| || ||||| || ||||||||| | | |||| |||||||| || ||| | Sbjct 440 CGGGCCGCCCGGCACCGGCAAGACGACGAGCATCTGCGCGCTGGCGCGGGAGCTGCT--- 384 Query 254081 CGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGTTGGA 254140 || || ||| | || || ||||||||||||| ||||| || |||| || ||| ||| Sbjct 383 CGCGGAGAAGTTCAGCGAAGGCGTGCTCGAGCTCAACGCGTCGAACGAGCGGGGGCTGGC 324 Query 254141 CGTCGTCCGCGACAAGATCAAGACTTTC 254168 ||||| || |||||||||||| | ||| Sbjct 323 GGTCGTGCGGGACAAGATCAAGTCCTTC 296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073224170449984