Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq2393 87.8 1e-12 seq29849 84.2 2e-11 >seq2393 Length=4323 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | || |||| |||||| || || || || || ||||||||||| ||| Sbjct 897 CCTCCGCGCAGGCGGAGAACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCC 956 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | |||||| || || ||||| ||| |||| |||| ||| || ||| || Sbjct 957 AGAGTCCTGCCATCTTCTAACTGCTTGCCTGCAAAGATGAGTCGTTGCTGGTCCGGCGGG 1016 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || ||||| || ||| | ||| || | | | | || ||| | ||| Sbjct 1017 ATCCCCTCCTTGTCCTGAATCTTCGACTTCACATTTTCGATGGTATCATTCGACTCCACC 1076 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 |||| |||||| | ||||| || | ||||| ||||| || |||||| Sbjct 1077 TCAAGGGTGATAGTCTTGCCAGTAAGAGTTTTCACAAAGATCTGCATT 1124 >seq29849 Length=3363 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 |||| || || | ||| || || || || |||||||||||||||||||| | || | Sbjct 1055 AGTCGCAGCACAAGGTGGAGGGTCGACTCCTTTTGAATGTTGTAGTCGGCAAGGGTGCGA 1114 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | || || | ||| || || || |||| | || || || || || | ||||||| Sbjct 1115 CCGTCCTCGAGTTGCTTTCCTGCGAAGATCAATCGCTGCTGGTCAGGCGGGATGCCTTCC 1174 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 || || || | ||| || | ||| ||||| || |||| ||| | ||| Sbjct 1175 TTGTCCTGGATCTTCGACTTCACGTTCTCAATCGTGTCGTTGGACTCGACTTCGAGAGTG 1234 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 || | |||||||||| ||| || ||||||||||||||||| Sbjct 1235 ATCGTCTTGCCGGTCAGTGTCTTCACAAAAATTTGCATTTT 1275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379161783650685