Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diplonema_20papillatum_20[genbank_20GCA_5F001655075.1_202016-06-02] 39,413 sequences; 107,915,492 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq26061 284 1e-71 seq34427 123 2e-23 seq29849 107 2e-18 seq21875 96.9 3e-15 seq34640 95.1 1e-14 >seq26061 Length=1673 Score = 284 bits (314), Expect = 1e-71 Identities = 591/863 (68%), Gaps = 24/863 (3%) Strand=Plus/Plus Query 57543 GTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCG 57602 ||| |||| || || | | || ||||| ||| | |||||||| || || || || Sbjct 402 GTCTTGTTCCCCATCCAGCACCCGGACATCTGGCAGATGTACAAGGCCGCGGAGGCCTCA 461 Query 57603 TTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAA 57662 || ||||| |||||||| || |||||| | || |||| || ||||| |||||| Sbjct 462 TTCTGGACGGTCGAAGAGGTTGACCTGGCGGCCGACCTGAAGGACTGGGAGGGCCTCAAC 521 Query 57663 GAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATT 57722 || ||| || | || || | ||||| | ||||| |||||||| ||||| || || Sbjct 522 GACGGGGAGCGACACTTCATCACCCACGTCCTCGCGTTCTTCGCCGCTTCCGACGGCATC 581 Query 57723 GTTAACGAGAATTTGG--TCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGAT 57780 || |||||| | | ||| | | | | | || | || | | ||||| | | Sbjct 582 GTCCTCGAGAACCTCGCTTCGCG-GTTCATGA-ACGACATCCAGATCCCCGAGGCCCGGT 639 Query 57781 GCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCA 57840 |||| ||||| || || | || || |||||| | ||||| || | ||| || |||| Sbjct 640 GCTTCTACGGGTTCCAGATCGCGATCGAAAACATCCATTCCGAGACGTACAGTCTGCTCA 699 Query 57841 TCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAA 57900 |||| |||||| | ||| |||||| ||| ||| | |||||||| |||||| || Sbjct 700 TCGACACGTACATCAAGAACAACGCCGAAAAAGACACGCTGTTCAAGGCGATCTCGACGG 759 Query 57901 TGCCC-GCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCC 57959 |||| ||| || | |||||||| |||||| | ||||| ||||| ||| || ||| Sbjct 760 TGCCGTGCG-TCACGAAGAAGGCCGAGTGGGCCATCAAGTGGATCGGCAGCTCC---GCC 815 Query 57960 ACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTT-TTCGGGCAG 58018 |||||||| |||||||| |||||||||| || || || || || ||||| | |||| | Sbjct 816 ACGTTCGCGGAGAGGCTCGTCGCGTTCGCAGCGGTGGAGGGCATCTTCTTCTCCGGGTCG 875 Query 58019 CTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAA 58078 | ||| | || || ||| ||||||| || || |||||||| || |||||||| | || Sbjct 876 TTCTGC-TCGATCTTCTGGCTGAAGAAGCGGGGGCTGATGCCGGGGCTGACGTTCACGAA 934 Query 58079 CGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCA 58138 ||||| || || || |||||||| | || || || || ||||| | ||| | Sbjct 935 CGAGTACATCTCCCGAGACGAGGGCATGCACTGCGACTTCGCCTGCCTGCTCTAC---AA 991 Query 58139 CATTGTC-AATAAAC-CGACGC----GGGATCGCATCTTGGACATTATCACCGAGGCGGT 58192 || || | || || || | | |||| || | |||| | | | ||||| || Sbjct 992 CAAGCTCGAGTACACACGCCTCAGCAGGGAGCGTGTGGTGGAATTGCTTGCGGAGGCTGT 1051 Query 58193 CGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAA 58252 || ||||| || |||||||| || || || || ||||| || |||| ||||||| Sbjct 1052 AGCCATCGAGAAGGAGTTTGTAACGGACGCACTGCCGGTCAAGCTGATCGGGATGAACAG 1111 Query 58253 TGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCT--CGAACTGATT 58310 || ||||| | |||||||| ||||| || |||| |||| || | | | | | Sbjct 1112 CGACCTGATGGCGAAGTACATCGAGTTCGTGTGCGACCGACTGTTCGTGACTCTCGGCTA 1171 Query 58311 GGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAG 58370 |||| || | ||||||||| || ||||| || || ||| | || ||||| || | Sbjct 1172 CGAGA-AGT-ACTACAACACGGCGAACCCGTTCGACTTCATGGAGCTCATCTCCCTGCAA 1229 Query 58371 GGCAAGACAAACTTTTTCGaaaa 58393 |||||||||||||| |||||||| Sbjct 1230 GGCAAGACAAACTTCTTCGAAAA 1252 >seq34427 Length=4033 Score = 123 bits (136), Expect = 2e-23 Identities = 200/288 (69%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 23593 ACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCAT 23652 ||| || || || | |||||||||||| | || ||||| ||| | | ||||| ||||| Sbjct 3195 ACCATTGGCACGGATGTTGTGAACGTGTATGCCGATGCCGCCGGCAGTCTTCGAGATCAT 3136 Query 23653 CGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAA 23712 |||||| ||||| || |||||||| |||||||| ||| || || | || || | Sbjct 3135 CGCGCAGGTCTTCAGCGTCTCGTAGATCCCCTCGATAGAGTCGTCCTTCATGGCTACAAG 3076 Query 23713 GAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTG 23772 ||| || || |||||||||| ||||| || | || ||||| || ||| | || || Sbjct 3075 GAAGCATGACGACATTTGCGGGTTGGGTGTCCCTGCGTTGAACAACGTTGGGGTTGCATG 3016 Query 23773 CGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCC 23832 || || | || || | || |||||||| || | | | || |||| ||| Sbjct 3015 GGTGAAATCACCGTTGCTGAGCAGCTTGTACGTTTCCACGACCTTTTCGATGTTCTCGAA 2956 Query 23833 GTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGAC 23880 ||| || || |||| ||||||||||| ||||| || || | ||||| Sbjct 2955 GTGGATGCCAATGGAGACGCGCATCAGCATGTGCTGCGGGCGTTCGAC 2908 Score = 109 bits (120), Expect = 5e-19 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 23396 GCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCA 23455 |||| ||||| ||||||||| ||| || | | | || || || | |||||| Sbjct 3749 GCGCATACCTCTTCTTTGCCGTGGTTGCGCTTGAGGTGGAGGAACTCGAAGATGTCCGCG 3690 Query 23456 TGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACG 23515 ||||||||||||||||| | ||| || | ||| || ||| ||||| || |||||| Sbjct 3689 TGCCACGGCTCGAGGTAGATGGCGAAGGAACCCTTTCGCTTGCCTCCGCCTTGGTCGACG 3630 Query 23516 TAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565 ||||| ||||||| |||| |||| | |||||||| ||||| |||||||| Sbjct 3629 TAACGCGCCGTGTCGTTGAACACGCGAAGCATCGGTACGAGGCCGTTGGA 3580 >seq29849 Length=3363 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||||||||| || ||||| ||||| ||||| |||||||| |||| || || | Sbjct 1275 AAAATGCAAATTTTTGTGAAGACACTGACCGGCAAGACGATCACTCTCGAAGTCGAGTCC 1216 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||| | || | || || || || ||||||||||||| | ||||| ||| Sbjct 1215 AACGACACGATTGAGAACGTGAAGTCGAAGATCCAGGACAAGGAAGGCATCCCGCCTGAC 1156 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| | || ||||| || || || | || ||| | || | ||| || Sbjct 1155 CAGCAGCGATTGATCTTCGCAGGAAAGCAACTCGAGGACGGTCGCACCCTTGCCGACTAC 1096 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||||||| || ||||| || || || || || |||| || || |||| Sbjct 1095 AACATTCAAAAGGAGTCGACCCTCCACCTTGTGCTGCGACTCAGAGGTGGTA 1044 >seq21875 Length=4161 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| ||||| || || ||||||||| | || || || | Sbjct 446 AAGATGCAGATTTTCGTGAAGACCCTGACCGGGAAGACGATCACCCTTGAGGTGGAGTCA 387 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||| |||| | || || | || |||||||||||| | ||||||||| Sbjct 386 AACGACACGATCGAGAATGTGAAGTCTAAGATCCAGGACAAGGAAGGGATCCCGCCCGAC 327 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | || || ||||| || || ||| | || ||| | || || ||| || Sbjct 326 CAGCAGAGACTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACGCTGGCCGACTAC 267 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||| || || || || || || || ||||| | ||||| Sbjct 266 AACATCCAGAAGGAGTCCACCCTCCACCTGGTCTTGAGACT 226 >seq34640 Length=3269 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| ||||| ||||| || ||||| |||| || || || Sbjct 1345 AAGATGCAGATCTTCGTTAAGACCCTGACGGGCAAGACAATCACGCTCGAGGTCGAGTCG 1286 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| |||| | || || || || ||||||||| ||| | ||||| ||| Sbjct 1285 AATGACACCATCGAGAATGTGAAGTCGAAGATCCAGGACAAGGAGGGCATCCCGCCTGAC 1226 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| | || ||||| || || ||| |||| ||| | ||| | || || Sbjct 1225 CAGCAGCGGTTGATCTTCGCCGGGAAGCAGCTGGAGGACGGCAGGACGCTTGCGGACTAC 1166 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || ||||| || || ||||| || Sbjct 1165 AACATCCAGAAGGAGTCGACGCTGCACCTGGTGCT 1131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445546787610960